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  5. Sobic.003G139300.3

Sobic.003G139300.3


Description : subfamily ABCB transporter


Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G139300.3
Cluster HCAA Clusters: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
A4A49_11372 No alias abc transporter b family member 2 0.03 Orthogroups_2024-Update
A4A49_30488 No alias abc transporter b family member 21 0.02 Orthogroups_2024-Update
Brara.C01848.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.D00408.1 No alias subfamily ABCB transporter 0.02 Orthogroups_2024-Update
Brara.I00328.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Brara.I02993.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
GRMZM2G085236 No alias ATP binding cassette subfamily B19 0.02 Orthogroups_2024-Update
GRMZM2G167658 No alias ATP binding cassette subfamily B19 0.03 Orthogroups_2024-Update
Glyma.03G183600 No alias ATP binding cassette subfamily B1 0.02 Orthogroups_2024-Update
Glyma.17G259100 No alias P-glycoprotein 13 0.02 Orthogroups_2024-Update
Glyma.18G012700 No alias P-glycoprotein 18 0.03 Orthogroups_2024-Update
MA_10436810g0020 No alias (at3g28345 : 992.0) ABC transporter family protein;... 0.02 Orthogroups_2024-Update
Potri.014G113500 No alias P-glycoprotein 21 0.03 Orthogroups_2024-Update
Sobic.004G274600.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Solyc06g009290 No alias ABC transporter B family protein (AHRD V3.3 *** G7IBR0_MEDTR) 0.02 Orthogroups_2024-Update
Solyc07g018130 No alias ABC transporter B family protein (AHRD V3.3 *** G7JF16_MEDTR) 0.03 Orthogroups_2024-Update
Sopen02g032160 No alias ABC transporter transmembrane region 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
BP GO:0009439 cyanate metabolic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0032259 methylation IEP Predicted GO
BP GO:0043414 macromolecule methylation IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
MF GO:0070037 rRNA (pseudouridine) methyltransferase activity IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 714 984
IPR011527 ABC1_TM_dom 69 343
IPR003439 ABC_transporter-like 1056 1204
IPR003439 ABC_transporter-like 411 559
No external refs found!