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  5. Sobic.003G143600.1

Sobic.003G143600.1


Description : pectin methylesterase


Gene families : OG_42_0000087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000087_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G143600.1

Target Alias Description ECC score Gene Family Method Actions
Bradi2g19420 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.B01312.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Brara.B02987.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Brara.F03103.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Brara.F03540.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
LOC_Os03g19610 No alias pectinesterase, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os09g39760 No alias pectinesterase, putative, expressed 0.03 Orthogroups_2024-Update
Pp1s118_31V6 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Pp1s446_3V6 No alias pectin methylesterase 0.02 Orthogroups_2024-Update
Sobic.008G131300.1 No alias pectin methylesterase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEA 16Dec
BP GO:0042545 cell wall modification IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0006631 fatty acid metabolic process IEP Predicted GO
BP GO:0006633 fatty acid biosynthetic process IEP Predicted GO
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 43 312
No external refs found!