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  5. Sobic.003G144600.1

Sobic.003G144600.1


Description : E3 ubiquitin ligase


Gene families : OG_42_0000370 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000370_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G144600.1
Cluster HCAA Clusters: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
At5g62460 No alias RING/FYVE/PHD zinc finger superfamily protein... 0.02 Orthogroups_2024-Update
MA_75863g0010 No alias (at2g01275 : 87.0) RING/FYVE/PHD zinc finger superfamily... 0.02 Orthogroups_2024-Update
PSME_00029909-RA No alias (at3g47550 : 228.0) RING/FYVE/PHD zinc finger... 0.04 Orthogroups_2024-Update
PSME_00041779-RA No alias (at2g02960 : 252.0) RING/FYVE/PHD zinc finger... 0.03 Orthogroups_2024-Update
Seita.3G276500.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.009G223900.2 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 19 66
IPR022143 DUF3675 72 186
No external refs found!