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  5. Sobic.003G173600.1

Sobic.003G173600.1


Description : deubiquitinase *(AMSH)


Gene families : OG_42_0001868 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001868_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G173600.1
Cluster HCAA Clusters: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
Bradi2g12550 No alias associated molecule with the SH3 domain of STAM 3 0.02 Orthogroups_2024-Update
GRMZM2G173119 No alias associated molecule with the SH3 domain of STAM 3 0.02 Orthogroups_2024-Update
Glyma.05G237800 No alias associated molecule with the SH3 domain of STAM 1 0.03 Orthogroups_2024-Update
LOC_Os01g23640 No alias mov34/MPN/PAD-1 family protein, expressed 0.03 Orthogroups_2024-Update
Seita.5G179000.1 No alias deubiquitinase *(AMSH) 0.05 Orthogroups_2024-Update
evm.model.tig00000248.12 No alias (at4g16144 : 130.0) Encodes AMSH3, a deubiquitinating... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
MF GO:0008233 peptidase activity IEA 16Dec
MF GO:0008237 metallopeptidase activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
BP GO:0015693 magnesium ion transport IEP Predicted GO
BP GO:0016579 protein deubiquitination IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
BP GO:0070646 protein modification by small protein removal IEP Predicted GO
BP GO:0070838 divalent metal ion transport IEP Predicted GO
BP GO:0072511 divalent inorganic cation transport IEP Predicted GO
InterPro domains Description Start Stop
IPR015063 USP8_dimer 10 105
IPR000555 JAMM/MPN+_dom 335 440
No external refs found!