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  5. Sobic.003G180400.1

Sobic.003G180400.1


Description : subfamily ABCB transporter


Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G180400.1
Cluster HCAA Clusters: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
419451 No alias ABC transporter family protein 0.04 Orthogroups_2024-Update
Bradi2g47337 No alias ATP binding cassette subfamily B4 0.02 Orthogroups_2024-Update
Bradi2g47410 No alias ATP binding cassette subfamily B4 0.02 Orthogroups_2024-Update
Brara.K00170.1 No alias subfamily ABCB transporter 0.04 Orthogroups_2024-Update
GRMZM2G146034 No alias ABC transporter family protein 0.03 Orthogroups_2024-Update
GRMZM5G843537 No alias P-glycoprotein 11 0.03 Orthogroups_2024-Update
Glyma.02G008000 No alias ATP binding cassette subfamily B4 0.07 Orthogroups_2024-Update
Glyma.03G183600 No alias ATP binding cassette subfamily B1 0.02 Orthogroups_2024-Update
Glyma.13G119000 No alias P-glycoprotein 11 0.03 Orthogroups_2024-Update
HORVU0Hr1G015570.6 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
HORVU3Hr1G065240.1 No alias subfamily ABCB transporter 0.02 Orthogroups_2024-Update
LOC_Os04g38570 No alias multidrug resistance protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_107576g0010 No alias (q6yuu5|mdr_orysa : 852.0) Putative multidrug resistance... 0.03 Orthogroups_2024-Update
MA_62683g0010 No alias (at2g36910 : 1072.0) Belongs to the family of... 0.03 Orthogroups_2024-Update
MA_6870g0010 No alias (q6yuu5|mdr_orysa : 1284.0) Putative multidrug... 0.02 Orthogroups_2024-Update
MA_934204g0010 No alias (at3g28345 : 1352.0) ABC transporter family protein;... 0.03 Orthogroups_2024-Update
PSME_00001910-RA No alias (at3g28345 : 1399.0) ABC transporter family protein;... 0.03 Orthogroups_2024-Update
PSME_00009726-RA No alias (at2g47000 : 1556.0) Multidrug resistance ... 0.03 Orthogroups_2024-Update
PSME_00021092-RA No alias (at3g28345 : 1204.0) ABC transporter family protein;... 0.02 Orthogroups_2024-Update
PSME_00023484-RA No alias (at2g36910 : 1766.0) Belongs to the family of... 0.04 Orthogroups_2024-Update
PSME_00024064-RA No alias (at3g28345 : 1431.0) ABC transporter family protein;... 0.04 Orthogroups_2024-Update
PSME_00039347-RA No alias (at1g02520 : 802.0) P-glycoprotein 11 (PGP11); FUNCTIONS... 0.04 Orthogroups_2024-Update
Potri.001G165000 No alias ATP binding cassette subfamily B19 0.02 Orthogroups_2024-Update
Potri.003G094400 No alias P-glycoprotein 2 0.02 Orthogroups_2024-Update
Potri.010G003000 No alias ATP binding cassette subfamily B4 0.03 Orthogroups_2024-Update
Potri.011G133800 No alias P-glycoprotein 18 0.02 Orthogroups_2024-Update
Potri.017G081100 No alias ATP binding cassette subfamily B19 0.03 Orthogroups_2024-Update
Pp1s397_2V6 No alias multidrug pheromone mdr abc transporter family 0.03 Orthogroups_2024-Update
Sobic.004G174600.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Sobic.007G042600.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Solyc03g122070 No alias ABC transporter B family-like protein (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Solyc07g064120 No alias ABC transporter B family protein (AHRD V3.3 *** G7JF16_MEDTR) 0.05 Orthogroups_2024-Update
Solyc11g067300 No alias ABC transporter B family protein (AHRD V3.3 *** G7IBR0_MEDTR) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 64 335
IPR011527 ABC1_TM_dom 728 996
IPR003439 ABC_transporter-like 1067 1216
IPR003439 ABC_transporter-like 403 551
No external refs found!