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  5. Sobic.003G199800.5

Sobic.003G199800.5


Description : regulatory factor *(RIQ) of thylakoid grana stacking


Gene families : OG_42_0007069 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007069_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G199800.5
Cluster HCAA Clusters: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
AC217499.3_FG003 No alias Protein of unknown function (DUF1118) 0.04 Orthogroups_2024-Update
At1g74730 No alias Transmembrane protein, putative (DUF1118)... 0.04 Orthogroups_2024-Update
Bradi2g42040 No alias Protein of unknown function (DUF1118) 0.03 Orthogroups_2024-Update
Brara.B02139.1 No alias regulatory factor *(RIQ) of thylakoid grana stacking 0.03 Orthogroups_2024-Update
Glyma.04G174400 No alias Protein of unknown function (DUF1118) 0.02 Orthogroups_2024-Update
HORVU3Hr1G050800.1 No alias regulatory factor *(RIQ) of thylakoid grana stacking 0.04 Orthogroups_2024-Update
Kfl00114_0260 kfl00114_0260_v1.1 (at1g74730 : 155.0) Protein of unknown function... 0.02 Orthogroups_2024-Update
LOC_Os01g40310 No alias expressed protein 0.05 Orthogroups_2024-Update
MA_10433575g0010 No alias (at1g74730 : 174.0) Protein of unknown function... 0.05 Orthogroups_2024-Update
Mp3g09060.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update
Potri.015G065100 No alias Protein of unknown function (DUF1118) 0.03 Orthogroups_2024-Update
Pp1s241_62V6 No alias contains ESTs AU101298(E4372),D48939(S15524) similar to... 0.06 Orthogroups_2024-Update
Pp1s268_34V6 No alias contains ESTs AU101298(E4372),D48939(S15524) similar to... 0.04 Orthogroups_2024-Update
Pp1s57_109V6 No alias No description available 0.02 Orthogroups_2024-Update
Seita.5G256300.1 No alias regulatory factor *(RIQ) of thylakoid grana stacking 0.17 Orthogroups_2024-Update
Solyc03g113240 No alias transmembrane protein, putative (DUF1118) (AHRD V3.3 ***... 0.07 Orthogroups_2024-Update
Sopen03g032300 No alias Protein of unknown function (DUF1118) 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003839 gamma-glutamylcyclotransferase activity IEP Predicted GO
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Predicted GO
MF GO:0004089 carbonate dehydratase activity IEP Predicted GO
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Predicted GO
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0004629 phospholipase C activity IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006595 polyamine metabolic process IEP Predicted GO
BP GO:0006596 polyamine biosynthetic process IEP Predicted GO
BP GO:0006597 spermine biosynthetic process IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006631 fatty acid metabolic process IEP Predicted GO
BP GO:0006749 glutathione metabolic process IEP Predicted GO
BP GO:0006751 glutathione catabolic process IEP Predicted GO
BP GO:0008215 spermine metabolic process IEP Predicted GO
BP GO:0008216 spermidine metabolic process IEP Predicted GO
BP GO:0008295 spermidine biosynthetic process IEP Predicted GO
MF GO:0008883 glutamyl-tRNA reductase activity IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016830 carbon-carbon lyase activity IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016842 amidine-lyase activity IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
BP GO:0017144 drug metabolic process IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
BP GO:0042219 cellular modified amino acid catabolic process IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
BP GO:0043171 peptide catabolic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
BP GO:0044273 sulfur compound catabolic process IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Predicted GO
BP GO:0051187 cofactor catabolic process IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
BP GO:0097164 ammonium ion metabolic process IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR009500 DUF1118 75 189
No external refs found!