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  5. Sobic.003G200501.1

Sobic.003G200501.1


Description : histone *(H2B)


Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G200501.1
Cluster HCAA Clusters: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
At2g37470 No alias Histone H2B.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUS0] 0.03 Orthogroups_2024-Update
At3g45980 No alias Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V9F6] 0.03 Orthogroups_2024-Update
At3g46030 No alias Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178VGU6] 0.03 Orthogroups_2024-Update
Brara.B01057.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Brara.F01827.1 No alias histone *(H2B) 0.04 Orthogroups_2024-Update
Brara.J01445.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Cre06.g264900 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g273850 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g504550 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g504700 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g505600 No alias Histone superfamily protein 0.01 Orthogroups_2024-Update
Cre12.g506200 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre13.g570050 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre17.g708600 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G046841 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G071959 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G401147 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G472696 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G065100 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.12G065200 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G065400 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G173400 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G013530.1 No alias histone *(H2B) 0.03 Orthogroups_2024-Update
Kfl00099_g20 kfl00099_g20_v1.1... (p54347|h2b4_chlre : 156.0) Histone H2B.4 (H2B-IV) -... 0.06 Orthogroups_2024-Update
Kfl01110_0020 kfl01110_0020_v1.... (p16868|h2b4_volca : 167.0) Histone H2B.4 (H2B-IV) -... 0.01 Orthogroups_2024-Update
PSME_00041882-RA No alias (at5g22880 : 162.0) Encodes a histone 2B (H2B) protein.... 0.03 Orthogroups_2024-Update
Pp1s34_255V6 No alias histone h2b 0.02 Orthogroups_2024-Update
Pp1s56_226V6 No alias histone h2b 0.03 Orthogroups_2024-Update
Solyc02g038690 No alias Histone H2B (AHRD V3.3 *** K4B5W3_SOLLC) 0.03 Orthogroups_2024-Update
Solyc03g071620 No alias Histone H2B (AHRD V3.3 *** K4BHJ2_SOLLC) 0.02 Orthogroups_2024-Update
Solyc05g055440 No alias Histone H2B (AHRD V3.3 *** K4C2M0_SOLLC) 0.03 Orthogroups_2024-Update
Solyc06g005390 No alias Histone H2B (AHRD V3.3 *** K4C323_SOLLC) 0.02 Orthogroups_2024-Update
Solyc06g074790 No alias Histone H2B (AHRD V3.3 *** M1AAN4_SOLTU) 0.03 Orthogroups_2024-Update
Solyc11g007920 No alias Histone H2B (AHRD V3.3 *** K4D553_SOLLC) 0.04 Orthogroups_2024-Update
Sopen05g033890 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen06g001360 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen06g031230 No alias Core histone H2A/H2B/H3/H4 0.05 Orthogroups_2024-Update
Sopen06g032230 No alias Core histone H2A/H2B/H3/H4 0.05 Orthogroups_2024-Update
Sopen11g003790 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen11g026180 No alias Core histone H2A/H2B/H3/H4 0.05 Orthogroups_2024-Update
Sopen12g006850 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
evm.model.tig00000093.85 No alias (p16868|h2b4_volca : 140.0) Histone H2B.4 (H2B-IV) -... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006694 steroid biosynthetic process IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0008202 steroid metabolic process IEP Predicted GO
MF GO:0016229 steroid dehydrogenase activity IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 8 129
No external refs found!