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  5. Sobic.003G205600.1

Sobic.003G205600.1


Description : LRR-domain extensin


Gene families : OG_42_0000323 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000323_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G205600.1
Cluster HCAA Clusters: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
81544 No alias Leucine-rich repeat (LRR) family protein 0.03 Orthogroups_2024-Update
A4A49_26804 No alias pollen-specific leucine-rich repeat extensin-like protein 1 0.01 Orthogroups_2024-Update
At1g12040 No alias Leucine-rich repeat extensin-like protein 1... 0.02 Orthogroups_2024-Update
At2g15880 No alias Pollen-specific leucine-rich repeat extensin-like... 0.06 Orthogroups_2024-Update
At3g19020 No alias Pollen-specific leucine-rich repeat extensin-like... 0.03 Orthogroups_2024-Update
Bradi1g14050 No alias Leucine-rich repeat (LRR) family protein 0.02 Orthogroups_2024-Update
Bradi1g55720 No alias Leucine-rich repeat (LRR) family protein 0.03 Orthogroups_2024-Update
Bradi2g33930 No alias Leucine-rich repeat (LRR) family protein 0.04 Orthogroups_2024-Update
Brara.C03718.1 No alias LRR-domain extensin 0.01 Orthogroups_2024-Update
Glyma.09G188600 No alias Leucine-rich repeat (LRR) family protein 0.06 Orthogroups_2024-Update
HORVU3Hr1G021700.1 No alias LRR-domain extensin 0.1 Orthogroups_2024-Update
HORVU5Hr1G024380.4 No alias LRR-domain extensin 0.01 Orthogroups_2024-Update
HORVU5Hr1G093410.1 No alias LRR-domain extensin 0.04 Orthogroups_2024-Update
LOC_Os01g41120 No alias retrotransposon protein, putative, Ty3-gypsy subclass, expressed 0.01 Orthogroups_2024-Update
LOC_Os06g49100 No alias retrotransposon protein, putative, unclassified, expressed 0.01 Orthogroups_2024-Update
MA_100985g0010 No alias (at4g13340 : 496.0) Leucine-rich repeat (LRR) family... 0.01 Orthogroups_2024-Update
MA_179279g0010 No alias (at3g24480 : 521.0) Leucine-rich repeat (LRR) family... 0.02 Orthogroups_2024-Update
Potri.004G146400 No alias Leucine-rich repeat (LRR) family protein 0.02 Orthogroups_2024-Update
Potri.006G162300 No alias Leucine-rich repeat (LRR) family protein 0.02 Orthogroups_2024-Update
Potri.018G075900 No alias Leucine-rich repeat (LRR) family protein 0.02 Orthogroups_2024-Update
Potri.018G151000 No alias leucine-rich repeat/extensin 2 0.02 Orthogroups_2024-Update
Seita.1G092900.1 No alias LRR-domain extensin 0.02 Orthogroups_2024-Update
Seita.2G050800.1 No alias LRR-domain extensin 0.03 Orthogroups_2024-Update
Seita.3G105100.1 No alias LRR-domain extensin 0.01 Orthogroups_2024-Update
Seita.9G057000.1 No alias LRR-domain extensin 0.01 Orthogroups_2024-Update
Sopen05g022480 No alias Leucine Rich Repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 270 328
IPR001611 Leu-rich_rpt 151 209
No external refs found!