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  5. Sobic.003G208300.1

Sobic.003G208300.1


Description : Unknown function


Gene families : OG_42_0004912 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004912_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G208300.1
Cluster HCAA Clusters: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
At3g49240 No alias Pentatricopeptide repeat-containing protein At3g49240,... 0.04 Orthogroups_2024-Update
Bradi2g42630 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Brara.F02071.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.04G235800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G080900.3 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU3Hr1G052280.1 No alias Unknown function 0.05 Orthogroups_2024-Update
LOC_Os11g24570 No alias PPR repeat domain containing protein, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00034425-RA No alias (at3g49240 : 238.0) embryo defective 1796 (emb1796);... 0.02 Orthogroups_2024-Update
Potri.012G015400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Seita.3G254800.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc03g083280 No alias Pentatricopeptide repeat-containing protein, putative... 0.03 Orthogroups_2024-Update
Sopen03g023030 No alias PPR repeat family 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004664 prephenate dehydratase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005856 cytoskeleton IEP Predicted GO
BP GO:0006558 L-phenylalanine metabolic process IEP Predicted GO
BP GO:0009094 L-phenylalanine biosynthetic process IEP Predicted GO
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Predicted GO
BP GO:0040008 regulation of growth IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
BP GO:0045927 positive regulation of growth IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Predicted GO
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 282 311
IPR002885 Pentatricopeptide_repeat 360 389
IPR002885 Pentatricopeptide_repeat 320 345
IPR002885 Pentatricopeptide_repeat 209 238
IPR002885 Pentatricopeptide_repeat 249 272
IPR002885 Pentatricopeptide_repeat 130 181
IPR002885 Pentatricopeptide_repeat 461 508
IPR002885 Pentatricopeptide_repeat 391 439
No external refs found!