1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.003G215300.2

Sobic.003G215300.2


Description : subfamily ABCG transporter


Gene families : OG_42_0000055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G215300.2
Cluster HCAA Clusters: Cluster_233

Target Alias Description ECC score Gene Family Method Actions
101338 No alias pleiotropic drug resistance 11 0.02 Orthogroups_2024-Update
235359 No alias pleiotropic drug resistance 6 0.02 Orthogroups_2024-Update
441717 No alias pleiotropic drug resistance 12 0.02 Orthogroups_2024-Update
96758 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
HORVU3Hr1G053350.8 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
MA_10425791g0020 No alias (q8gu88|pdr7_orysa : 1086.0) Putative pleiotropic drug... 0.02 Orthogroups_2024-Update
PSME_00000869-RA No alias (q5z9s8|pdr12_orysa : 1879.0) Pleiotropic drug... 0.03 Orthogroups_2024-Update
Seita.2G152000.1 No alias subfamily ABCG transporter 0.01 Orthogroups_2024-Update
Sobic.003G216000.1 No alias subfamily ABCG transporter 0.02 Orthogroups_2024-Update
Sopen05g032100 No alias ABC-2 type transporter 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
CC GO:0030126 COPI vesicle coat IEP Predicted GO
InterPro domains Description Start Stop
IPR013581 PDR_assoc 557 622
IPR003439 ABC_transporter-like 4 186
IPR003439 ABC_transporter-like 712 864
IPR013525 ABC_2_trans 340 551
IPR013525 ABC_2_trans 1010 1223
No external refs found!