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  5. Sobic.003G215600.1

Sobic.003G215600.1


Description : subfamily ABCG transporter


Gene families : OG_42_0000055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G215600.1
Cluster HCAA Clusters: Cluster_264

Target Alias Description ECC score Gene Family Method Actions
101338 No alias pleiotropic drug resistance 11 0.03 Orthogroups_2024-Update
426328 No alias pleiotropic drug resistance 6 0.02 Orthogroups_2024-Update
96758 No alias pleiotropic drug resistance 12 0.02 Orthogroups_2024-Update
Brara.C01827.1 No alias subfamily ABCG transporter 0.02 Orthogroups_2024-Update
Glyma.19G169400 No alias pleiotropic drug resistance 12 0.02 Orthogroups_2024-Update
LOC_Os01g08260 No alias pleiotropic drug resistance protein 4, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g32690 No alias pleiotropic drug resistance protein 15, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00000869-RA No alias (q5z9s8|pdr12_orysa : 1879.0) Pleiotropic drug... 0.02 Orthogroups_2024-Update
PSME_00001761-RA No alias (q5z9s8|pdr12_orysa : 1822.0) Pleiotropic drug... 0.03 Orthogroups_2024-Update
PSME_00014724-RA No alias (q76cu2|pdr1_tobac : 1860.0) Pleiotropic drug resistance... 0.04 Orthogroups_2024-Update
PSME_00037776-RA No alias (at1g59870 : 665.0) ATP binding cassette transporter.... 0.01 Orthogroups_2024-Update
Potri.001G175700 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
Pp1s59_42V6 No alias atp-binding cassette 0.02 Orthogroups_2024-Update
Seita.5G115400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G221300.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Seita.9G187700.1 No alias subfamily ABCG transporter 0.02 Orthogroups_2024-Update
Sobic.001G190700.2 No alias subfamily ABCG transporter 0.02 Orthogroups_2024-Update
Sobic.004G254100.1 No alias subfamily ABCG transporter 0.02 Orthogroups_2024-Update
Sobic.005G183900.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Solyc09g091670 No alias Pleiotropic drug resistance ABC transporter (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc11g067000 No alias Drug resistance transporter-like ABC domain protein... 0.02 Orthogroups_2024-Update
Sopen03g039810 No alias ABC-2 type transporter 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006476 protein deacetylation IEP Predicted GO
BP GO:0009607 response to biotic stimulus IEP Predicted GO
BP GO:0009617 response to bacterium IEP Predicted GO
BP GO:0009620 response to fungus IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
BP GO:0016575 histone deacetylation IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0035601 protein deacylation IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
BP GO:0042742 defense response to bacterium IEP Predicted GO
BP GO:0043207 response to external biotic stimulus IEP Predicted GO
BP GO:0050832 defense response to fungus IEP Predicted GO
BP GO:0051704 multi-organism process IEP Predicted GO
BP GO:0051707 response to other organism IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
BP GO:0098542 defense response to other organism IEP Predicted GO
BP GO:0098732 macromolecule deacylation IEP Predicted GO
InterPro domains Description Start Stop
IPR029481 ABC_trans_N 110 160
IPR003439 ABC_transporter-like 894 1046
IPR003439 ABC_transporter-like 186 368
IPR013525 ABC_2_trans 522 733
IPR013525 ABC_2_trans 1192 1405
IPR013581 PDR_assoc 739 804
No external refs found!