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  5. Sobic.003G234000.1

Sobic.003G234000.1


Description : Unknown function


Gene families : OG_42_0001089 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001089_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G234000.1
Cluster HCAA Clusters: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
At1g70420 No alias At1g70420/F17O7_4 [Source:UniProtKB/TrEMBL;Acc:O64594] 0.03 Orthogroups_2024-Update
At5g62770 No alias At5g62770 [Source:UniProtKB/TrEMBL;Acc:Q9FM16] 0.03 Orthogroups_2024-Update
Brara.B01910.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.F03177.1 No alias Unknown function 0.04 Orthogroups_2024-Update
GRMZM2G048892 No alias Protein of unknown function (DUF1645) 0.03 Orthogroups_2024-Update
Glyma.16G073400 No alias Protein of unknown function (DUF1645) 0.03 Orthogroups_2024-Update
MA_13470g0010 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
Potri.010G041300 No alias Protein of unknown function (DUF1645) 0.04 Orthogroups_2024-Update
Solyc03g114350 No alias LOW QUALITY:DUF1645 family protein (AHRD V3.3 *** G7J5G5_MEDTR) 0.02 Orthogroups_2024-Update
Sopen03g033450 No alias Protein of unknown function (DUF1645) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR012442 DUF1645_plant 56 255
No external refs found!