Sobic.003G246400.1

Description : component *(bL12c) of large plastid ribosomal-subunit proteome

Gene families : OG_42_0003941 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003941_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.003G246400.1
Cluster	HCAA Clusters: Cluster_222

Target	Alias	Description	ECC score	Gene Family Method
A4A49_11444	No alias	50s ribosomal protein l12, chloroplastic	0.07	Orthogroups_2024-Update
Bradi2g45730	No alias	ribosomal protein L12-C	0.09	Orthogroups_2024-Update
Brara.B03314.1	No alias	component *(bL12c) of large plastid ribosomal-subunit proteome	0.07	Orthogroups_2024-Update
Brara.F03180.1	No alias	component *(bL12c) of large plastid ribosomal-subunit proteome	0.09	Orthogroups_2024-Update
Brara.F03181.1	No alias	component *(bL12c) of large plastid ribosomal-subunit proteome	0.03	Orthogroups_2024-Update
Brara.I00300.1	No alias	component *(bL12c) of large plastid ribosomal-subunit proteome	0.04	Orthogroups_2024-Update
Cre13.g581650	No alias	ribosomal protein L12-A	0.12	Orthogroups_2024-Update
GRMZM2G360021	No alias	ribosomal protein L12-C	0.05	Orthogroups_2024-Update
HORVU1Hr1G089760.1	No alias	component *(bL12c) of large plastid ribosomal-subunit proteome	0.19	Orthogroups_2024-Update
HORVU3Hr1G059810.2	No alias	component *(bL12c) of large plastid ribosomal-subunit proteome	0.14	Orthogroups_2024-Update
Kfl00181_0250	kfl00181_0250_v1.1	(q9tl30\|rk12_nepol : 115.0) Chloroplast 50S ribosomal...	0.06	Orthogroups_2024-Update
LOC_Os05g49320	No alias	ribosomal protein L7/L12 C-terminal domain containing...	0.04	Orthogroups_2024-Update
Mp5g15720.1	No alias	component psRPL12 of large ribosomal subunit proteome	0.02	Orthogroups_2024-Update
Potri.001G346100	No alias	ribosomal protein L12-A	0.11	Orthogroups_2024-Update
Pp1s215_82V6	No alias	ribosomal protein l12	0.14	Orthogroups_2024-Update
Pp1s242_95V6	No alias	ribosomal protein l12	0.18	Orthogroups_2024-Update
Pp1s60_169V6	No alias	ribosomal protein l12	0.04	Orthogroups_2024-Update
Pp1s6_183V6	No alias	ribosomal protein l12	0.11	Orthogroups_2024-Update
Seita.3G141800.1	No alias	component *(bL12c) of large plastid ribosomal-subunit proteome	0.04	Orthogroups_2024-Update
Seita.5G253700.1	No alias	component *(bL12c) of large plastid ribosomal-subunit proteome	0.15	Orthogroups_2024-Update
Sopen02g031490	No alias	Ribosomal protein L7/L12 C-terminal domain	0.05	Orthogroups_2024-Update
Sopen02g031500	No alias	Ribosomal protein L7/L12 C-terminal domain	0.07	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Predicted GO
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Predicted GO
BP	GO:0006082	organic acid metabolic process	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
BP	GO:0006720	isoprenoid metabolic process	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
BP	GO:0008104	protein localization	IEP	Predicted GO
BP	GO:0008299	isoprenoid biosynthetic process	IEP	Predicted GO
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	Predicted GO
BP	GO:0015031	protein transport	IEP	Predicted GO
BP	GO:0015833	peptide transport	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Predicted GO
MF	GO:0016853	isomerase activity	IEP	Predicted GO
MF	GO:0016859	cis-trans isomerase activity	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Predicted GO
BP	GO:0017038	protein import	IEP	Predicted GO
BP	GO:0019752	carboxylic acid metabolic process	IEP	Predicted GO
CC	GO:0019898	extrinsic component of membrane	IEP	Predicted GO
BP	GO:0033036	macromolecule localization	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0042886	amide transport	IEP	Predicted GO
BP	GO:0043038	amino acid activation	IEP	Predicted GO
BP	GO:0043039	tRNA aminoacylation	IEP	Predicted GO
BP	GO:0043436	oxoacid metabolic process	IEP	Predicted GO
BP	GO:0044281	small molecule metabolic process	IEP	Predicted GO
BP	GO:0045184	establishment of protein localization	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR008932	Ribosomal_L7/L12_oligo	54	103
IPR013823	Ribosomal_L7/L12_C	114	180

External Links

No external refs found!

Sobic.003G246400.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation