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  5. Sobic.003G256200.1

Sobic.003G256200.1


Description : component *(bS20c) of small plastid ribosomal-subunit proteome


Gene families : OG_42_0007166 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007166_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G256200.1
Cluster HCAA Clusters: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
A4A49_29620 No alias 30s ribosomal protein s20, chloroplastic 0.04 Orthogroups_2024-Update
At3g15190 No alias PRPS20 [Source:UniProtKB/TrEMBL;Acc:A0A178VMN1] 0.03 Orthogroups_2024-Update
Bradi2g46520 No alias chloroplast 30S ribosomal protein S20, putative 0.05 Orthogroups_2024-Update
Brara.A03158.1 No alias component *(bS20c) of small plastid ribosomal-subunit proteome 0.07 Orthogroups_2024-Update
Brara.C03561.1 No alias component *(bS20c) of small plastid ribosomal-subunit proteome 0.03 Orthogroups_2024-Update
Brara.E02621.1 No alias component *(bS20c) of small plastid ribosomal-subunit proteome 0.05 Orthogroups_2024-Update
Cre12.g494750 No alias chloroplast 30S ribosomal protein S20, putative 0.04 Orthogroups_2024-Update
GRMZM2G163988 No alias chloroplast 30S ribosomal protein S20, putative 0.04 Orthogroups_2024-Update
Glyma.12G162300 No alias chloroplast 30S ribosomal protein S20, putative 0.02 Orthogroups_2024-Update
HORVU3Hr1G062490.1 No alias component *(bS20c) of small plastid ribosomal-subunit proteome 0.08 Orthogroups_2024-Update
Kfl00093_0180 kfl00093_0180_v1.1 (at3g15190 : 99.8) chloroplast 30S ribosomal protein... 0.03 Orthogroups_2024-Update
Potri.001G396600 No alias chloroplast 30S ribosomal protein S20, putative 0.06 Orthogroups_2024-Update
Pp1s323_3V6 No alias 30s ribosomal protein 0.04 Orthogroups_2024-Update
Seita.5G270200.1 No alias component *(bS20c) of small plastid ribosomal-subunit proteome 0.11 Orthogroups_2024-Update
Solyc07g062870 No alias 30S ribosomal protein S20 (AHRD V3.3 *** A0A060IGE4_PANGI) 0.04 Orthogroups_2024-Update
Sopen07g031070 No alias Ribosomal protein S20 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002583 Ribosomal_S20 87 173
No external refs found!