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  5. Sobic.003G267400.1

Sobic.003G267400.1


Description : MYB class-R2R3 transcription factor


Gene families : OG_42_0000002 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G267400.1
Cluster HCAA Clusters: Cluster_284

Target Alias Description ECC score Gene Family Method Actions
39481 No alias myb domain protein 3 0.03 Orthogroups_2024-Update
At4g21440 No alias Transcription factor MYB102... 0.03 Orthogroups_2024-Update
At4g28110 No alias MYB41 [Source:UniProtKB/TrEMBL;Acc:A0A178V452] 0.03 Orthogroups_2024-Update
Bradi2g62510 No alias myb domain protein 59 0.01 Orthogroups_2024-Update
Bradi4g36210 No alias myb domain protein 85 0.04 Orthogroups_2024-Update
Brara.D01054.1 No alias MYB class-R2R3 subgroup-15 transcription factor 0.03 Orthogroups_2024-Update
Brara.G00616.1 No alias MYB class-R2R3 transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G057027 No alias myb domain protein 12 0.02 Orthogroups_2024-Update
Glyma.05G211200 No alias myb domain protein 103 0.02 Orthogroups_2024-Update
Glyma.12G237500 No alias myb domain protein 83 0.01 Orthogroups_2024-Update
Glyma.15G066800 No alias MYB-like 102 0.03 Orthogroups_2024-Update
HORVU2Hr1G028470.5 No alias MYB class-R2R3 subgroup-1 transcription factor 0.02 Orthogroups_2024-Update
HORVU6Hr1G058580.1 No alias MYB class-R2R3 subgroup-2 transcription factor 0.03 Orthogroups_2024-Update
Kfl00493_0040 kfl00493_0040_v1.1 (at2g32460 : 155.0) Member of the R2R3 factor gene... 0.01 Orthogroups_2024-Update
LOC_Os01g45090 No alias MYB family transcription factor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os02g49986 No alias MYB family transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g37210 No alias MYB family transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g36250 No alias MYB family transcription factor, putative, expressed 0.03 Orthogroups_2024-Update
MA_14061g0010 No alias (at5g57620 : 229.0) Encodes a putative transcription... 0.03 Orthogroups_2024-Update
MA_1589g0010 No alias (at1g63910 : 241.0) member of MYB3R- and R2R3- type MYB-... 0.03 Orthogroups_2024-Update
MA_175772g0010 No alias (at1g22640 : 206.0) MYB-type transcription factor (MYB3)... 0.04 Orthogroups_2024-Update
MA_2871g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
PSME_00031962-RA No alias (at4g13480 : 170.0) Member of the R2R3 factor gene... 0.02 Orthogroups_2024-Update
PSME_00042627-RA No alias (at3g61250 : 265.0) Member of the R2R3 factor gene... 0.02 Orthogroups_2024-Update
Potri.008G101400 No alias myb domain protein 108 0.02 Orthogroups_2024-Update
Potri.019G118900 No alias myb domain protein 63 0.03 Orthogroups_2024-Update
Seita.2G404100.1 No alias MYB class-R2R3 subgroup-13 transcription factor 0.02 Orthogroups_2024-Update
Seita.9G222100.1 No alias MYB class-R2R3 subgroup-2 transcription factor 0.03 Orthogroups_2024-Update
Seita.9G368500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G204400.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Sobic.001G358900.1 No alias MYB class-R2R3 subgroup-13 transcription factor 0.03 Orthogroups_2024-Update
Solyc02g067340 No alias R2R3MYB transcription factor 96 0.03 Orthogroups_2024-Update
Solyc11g069030 No alias blind 0.02 Orthogroups_2024-Update
Sopen06g018710 No alias Myb-like DNA-binding domain 0.02 Orthogroups_2024-Update
Sopen10g001230 No alias Myb-like DNA-binding domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0005244 voltage-gated ion channel activity IEP Predicted GO
MF GO:0005247 voltage-gated chloride channel activity IEP Predicted GO
MF GO:0005253 anion channel activity IEP Predicted GO
MF GO:0005254 chloride channel activity IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006820 anion transport IEP Predicted GO
BP GO:0006821 chloride transport IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
MF GO:0008308 voltage-gated anion channel activity IEP Predicted GO
MF GO:0015108 chloride transmembrane transporter activity IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0022832 voltage-gated channel activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0033897 ribonuclease T2 activity IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 82 122
IPR001005 SANT/Myb 24 71
No external refs found!