1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.003G269400.2

Sobic.003G269400.2


Description : Unknown function


Gene families : OG_42_0000452 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000452_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G269400.2
Cluster HCAA Clusters: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
Bradi3g51950 No alias Regulator of chromosome condensation (RCC1) family with... 0.01 Orthogroups_2024-Update
Brara.F01931.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G092616 No alias Regulator of chromosome condensation (RCC1) family with... 0.02 Orthogroups_2024-Update
GRMZM2G174949 No alias Regulator of chromosome condensation (RCC1) family protein 0.05 Orthogroups_2024-Update
Glyma.03G040800 No alias Regulator of chromosome condensation (RCC1) family with... 0.02 Orthogroups_2024-Update
Glyma.20G165400 No alias Regulator of chromosome condensation (RCC1) family with... 0.03 Orthogroups_2024-Update
HORVU6Hr1G066460.35 No alias Unknown function 0.03 Orthogroups_2024-Update
Mp1g24610.1 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.02 Orthogroups_2024-Update
Seita.5G455200.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sopen02g025890 No alias Regulator of chromosome condensation (RCC1) repeat 0.04 Orthogroups_2024-Update
Sopen12g034380 No alias Regulator of chromosome condensation (RCC1) repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0004484 mRNA guanylyltransferase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
MF GO:0005384 manganese ion transmembrane transporter activity IEP Predicted GO
BP GO:0006370 7-methylguanosine mRNA capping IEP Predicted GO
BP GO:0006873 cellular ion homeostasis IEP Predicted GO
BP GO:0006875 cellular metal ion homeostasis IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0008192 RNA guanylyltransferase activity IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
BP GO:0009452 7-methylguanosine RNA capping IEP Predicted GO
BP GO:0016073 snRNA metabolic process IEP Predicted GO
BP GO:0016180 snRNA processing IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
BP GO:0017006 protein-tetrapyrrole linkage IEP Predicted GO
BP GO:0017007 protein-bilin linkage IEP Predicted GO
BP GO:0017009 protein-phycocyanobilin linkage IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
BP GO:0030003 cellular cation homeostasis IEP Predicted GO
BP GO:0030026 cellular manganese ion homeostasis IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
BP GO:0034472 snRNA 3'-end processing IEP Predicted GO
BP GO:0034477 U6 snRNA 3'-end processing IEP Predicted GO
BP GO:0036260 RNA capping IEP Predicted GO
BP GO:0043628 ncRNA 3'-end processing IEP Predicted GO
MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
BP GO:0046916 cellular transition metal ion homeostasis IEP Predicted GO
BP GO:0048878 chemical homeostasis IEP Predicted GO
BP GO:0050801 ion homeostasis IEP Predicted GO
BP GO:0055065 metal ion homeostasis IEP Predicted GO
BP GO:0055071 manganese ion homeostasis IEP Predicted GO
BP GO:0055076 transition metal ion homeostasis IEP Predicted GO
BP GO:0055080 cation homeostasis IEP Predicted GO
BP GO:0055082 cellular chemical homeostasis IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
MF GO:0070568 guanylyltransferase activity IEP Predicted GO
BP GO:0098771 inorganic ion homeostasis IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
InterPro domains Description Start Stop
IPR000306 Znf_FYVE 601 667
IPR000408 Reg_chr_condens 276 324
IPR000408 Reg_chr_condens 383 431
IPR000408 Reg_chr_condens 550 597
IPR000408 Reg_chr_condens 327 379
IPR000408 Reg_chr_condens 447 493
IPR000408 Reg_chr_condens 496 545
IPR013591 Brevis_radix_dom 982 1035
IPR027988 BRX_N 848 883
No external refs found!