Sobic.003G293100.1

Description : transcription factor *(A/B-GATA)

Gene families : OG_42_0000071 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.003G293100.1
Cluster	HCAA Clusters: Cluster_112

Target	Alias	Description	ECC score	Gene Family Method
At2g45050	No alias	GATA transcription factor 2...	0.03	Orthogroups_2024-Update
At4g36620	No alias	GATA transcription factor 19...	0.04	Orthogroups_2024-Update
Brara.I00526.1	No alias	transcription factor *(A/B-GATA)	0.03	Orthogroups_2024-Update
Cre06.g266950	No alias	Function unknown	0.02	Orthogroups_2024-Update
Cre07.g319701	No alias	GATA transcription factor 11	0.01	Orthogroups_2024-Update
Cre11.g467581	No alias	GATA transcription factor 19	0.01	Orthogroups_2024-Update
GRMZM2G110295	No alias	GATA transcription factor 2	0.03	Orthogroups_2024-Update
GRMZM2G325850	No alias	GATA type zinc finger transcription factor family protein	0.03	Orthogroups_2024-Update
Glyma.16G155300	No alias	GATA transcription factor 4	0.03	Orthogroups_2024-Update
LOC_Os12g07120	No alias	GATA zinc finger domain containing protein, expressed	0.02	Orthogroups_2024-Update
MA_18616g0010	No alias	(at5g25830 : 192.0) Encodes a member of the GATA factor...	0.03	Orthogroups_2024-Update
Potri.004G161500	No alias	GATA transcription factor 5	0.03	Orthogroups_2024-Update
Pp1s121_36V6	No alias	gata transcription factor 19	0.03	Orthogroups_2024-Update
Sopen02g013380	No alias	GATA zinc finger	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	16Dec
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000679	Znf_GATA	287	320

External Links

No external refs found!

Sobic.003G293100.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation