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  5. Sobic.003G293800.1

Sobic.003G293800.1


Description : endo-beta-1,4-mannanase


Gene families : OG_42_0000309 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000309_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G293800.1
Cluster HCAA Clusters: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
At1g02310 No alias Glycosyl hydrolase superfamily protein... 0.02 Orthogroups_2024-Update
Brara.C00006.1 No alias endo-beta-1,4-mannanase 0.03 Orthogroups_2024-Update
Brara.I00904.1 No alias endo-beta-1,4-mannanase 0.03 Orthogroups_2024-Update
Glyma.04G030400 No alias Glycosyl hydrolase superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G030500 No alias Glycosyl hydrolase superfamily protein 0.02 Orthogroups_2024-Update
Glyma.09G224500 No alias Glycosyl hydrolase superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G226300 No alias Glycosyl hydrolase superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os01g47400 No alias OsMan01 - Endo-Beta-Mannanase, expressed 0.03 Orthogroups_2024-Update
LOC_Os03g61280 No alias OsMan05 - Endo-Beta-Mannanase, expressed 0.04 Orthogroups_2024-Update
MA_894609g0010 No alias (at5g66460 : 457.0) Glycosyl hydrolase superfamily... 0.04 Orthogroups_2024-Update
MA_955078g0010 No alias (at5g66460 : 462.0) Glycosyl hydrolase superfamily... 0.04 Orthogroups_2024-Update
Potri.006G109900 No alias Glycosyl hydrolase superfamily protein 0.02 Orthogroups_2024-Update
Potri.007G022000 No alias Glycosyl hydrolase superfamily protein 0.03 Orthogroups_2024-Update
Potri.013G130400 No alias Glycosyl hydrolase superfamily protein 0.03 Orthogroups_2024-Update
Sobic.001G066900.1 No alias endo-beta-1,4-mannanase 0.03 Orthogroups_2024-Update
Solyc07g053920 No alias Mannan endo-1,4-beta-mannosidase 2 (AHRD V3.3 *** MAN2_ARATH) 0.05 Orthogroups_2024-Update
Solyc12g013770 No alias Mannan endo-1,4-beta-mannosidase 1 (AHRD V3.3 *** MAN1_SOLLC) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA 16Dec
BP GO:0071704 organic substance metabolic process IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0007275 multicellular organism development IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
BP GO:0032501 multicellular organismal process IEP Predicted GO
MF GO:0035673 oligopeptide transmembrane transporter activity IEP Predicted GO
MF GO:0042887 amide transmembrane transporter activity IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
MF GO:1904680 peptide transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001547 Glyco_hydro_5 82 375
No external refs found!