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  5. Sobic.003G299700.1

Sobic.003G299700.1


Description : TCP-type transcription factor


Gene families : OG_42_0000203 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000203_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G299700.1
Cluster HCAA Clusters: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
At2g31070 No alias Transcription factor TCP10... 0.04 Orthogroups_2024-Update
At3g02150 No alias Transcription factor TCP13... 0.04 Orthogroups_2024-Update
Brara.A02926.1 No alias TCP-type transcription factor 0.03 Orthogroups_2024-Update
Brara.K00447.1 No alias TCP-type transcription factor 0.03 Orthogroups_2024-Update
GRMZM2G115516 No alias TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 0.03 Orthogroups_2024-Update
Glyma.04G161400 No alias TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 0.05 Orthogroups_2024-Update
Glyma.12G208800 No alias TCP family transcription factor 4 0.03 Orthogroups_2024-Update
Glyma.17G079900 No alias TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 0.03 Orthogroups_2024-Update
Glyma.18G280700 No alias TCP family transcription factor 0.03 Orthogroups_2024-Update
HORVU3Hr1G072670.2 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os02g51310 No alias TCP family transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g43760 No alias TCP family transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
Potri.001G375800 No alias TCP family transcription factor 4 0.03 Orthogroups_2024-Update
Potri.012G059900 No alias TCP family transcription factor 0.04 Orthogroups_2024-Update
Potri.015G050500 No alias TCP family transcription factor 0.03 Orthogroups_2024-Update
Seita.5G322500.1 No alias TCP-type transcription factor 0.06 Orthogroups_2024-Update
Sobic.002G198400.1 No alias TCP-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.009G195000.2 No alias TCP-type transcription factor 0.03 Orthogroups_2024-Update
Solyc06g069460 No alias TCP transcription factor 6 0.02 Orthogroups_2024-Update
Solyc12g014140 No alias SlTCP3 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
CC GO:0005956 protein kinase CK2 complex IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016409 palmitoyltransferase activity IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0019207 kinase regulator activity IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
MF GO:0019887 protein kinase regulator activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0035673 oligopeptide transmembrane transporter activity IEP Predicted GO
MF GO:0042887 amide transmembrane transporter activity IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
MF GO:1904680 peptide transmembrane transporter activity IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR017887 TF_TCP_subgr 128 262
No external refs found!