1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.003G299800.1

Sobic.003G299800.1


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G299800.1
Cluster HCAA Clusters: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
101273 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
A4A49_09451 No alias ring-h2 finger protein atl72 0.03 Orthogroups_2024-Update
A4A49_16075 No alias ring-h2 finger protein atl67 0.02 Orthogroups_2024-Update
A4A49_37314 No alias e3 ubiquitin-protein ligase atl9 0.03 Orthogroups_2024-Update
At1g35330 No alias RING/U-box superfamily protein [Source:TAIR;Acc:AT1G35330] 0.03 Orthogroups_2024-Update
At3g14320 No alias Putative RING-H2 finger protein ATL61... 0.02 Orthogroups_2024-Update
At4g09100 No alias RING-H2 finger protein ATL39... 0.03 Orthogroups_2024-Update
At4g10150 No alias RING-H2 finger protein ATL7... 0.06 Orthogroups_2024-Update
At5g17600 No alias RING-H2 finger protein ATL52... 0.04 Orthogroups_2024-Update
Bradi1g45727 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Brara.A03822.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.B02007.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.D02177.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.G03107.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.I02379.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.J02673.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
GRMZM2G004480 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G480106 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.14G058000 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
Glyma.16G030900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G050900 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.19G010400 No alias hypoxia-responsive family protein / zinc finger... 0.05 Orthogroups_2024-Update
Glyma.20G231900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
HORVU0Hr1G016510.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
HORVU2Hr1G074210.1 No alias regulatory ubiquitin-protein ligase *(PRU2) 0.04 Orthogroups_2024-Update
HORVU6Hr1G091610.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
HORVU7Hr1G107430.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
HORVU7Hr1G120930.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
LOC_Os04g34230 No alias RING-H2 finger protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g36310 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_17362g0010 No alias (at5g06490 : 90.5) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
PSME_00034763-RA No alias (at5g05280 : 85.1) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
Potri.002G006400 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.003G075200 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.005G113200 No alias receptor homology region transmembrane domain ring H2... 0.02 Orthogroups_2024-Update
Potri.007G111900 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.008G018900 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.011G063100 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.013G157000 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.016G136200 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.019G130100 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Pp1s133_51V6 No alias ring finger 0.04 Orthogroups_2024-Update
Pp1s85_173V6 No alias No description available 0.02 Orthogroups_2024-Update
Seita.1G186600.1 No alias regulatory ubiquitin-protein ligase *(PRU2) 0.03 Orthogroups_2024-Update
Seita.1G279400.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.7G110600.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.7G205000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.7G218600.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Seita.9G336200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G345400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.004G109100.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G279000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Solyc01g066430 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT2G47560.1) 0.04 Orthogroups_2024-Update
Solyc02g067700 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Sopen06g022560 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen11g001290 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen11g001310 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen11g002340 No alias Ring finger domain 0.04 Orthogroups_2024-Update
evm.model.contig_2102.17 No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
evm.model.tig00001128.32 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
BP GO:0006020 inositol metabolic process IEP Predicted GO
BP GO:0006066 alcohol metabolic process IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
BP GO:0019310 inositol catabolic process IEP Predicted GO
BP GO:0019751 polyol metabolic process IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
BP GO:0044275 cellular carbohydrate catabolic process IEP Predicted GO
BP GO:0044282 small molecule catabolic process IEP Predicted GO
BP GO:0046164 alcohol catabolic process IEP Predicted GO
BP GO:0046174 polyol catabolic process IEP Predicted GO
MF GO:0050113 inositol oxygenase activity IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:1901615 organic hydroxy compound metabolic process IEP Predicted GO
BP GO:1901616 organic hydroxy compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 118 162
No external refs found!