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  5. Sobic.003G309200.1

Sobic.003G309200.1


Description : mRNA decay factor *(PAT1)


Gene families : OG_42_0001618 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001618_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G309200.1

Target Alias Description ECC score Gene Family Method Actions
Bradi2g20210 No alias Topoisomerase II-associated protein PAT1 0.02 Orthogroups_2024-Update
Bradi2g20220 No alias Topoisomerase II-associated protein PAT1 0.01 Orthogroups_2024-Update
Bradi2g51080 No alias Topoisomerase II-associated protein PAT1 0.02 Orthogroups_2024-Update
Brara.F01158.1 No alias mRNA decay factor *(PAT1) 0.01 Orthogroups_2024-Update
Cre06.g278203 No alias Function unknown 0.01 Orthogroups_2024-Update
GRMZM2G104955 No alias Topoisomerase II-associated protein PAT1 0.03 Orthogroups_2024-Update
Glyma.08G171700 No alias Function unknown 0.01 Orthogroups_2024-Update
Potri.006G021900 No alias Topoisomerase II-associated protein PAT1 0.01 Orthogroups_2024-Update
Pp1s362_28V6 No alias hypothetical protein similar to Arabidopsis thaliana... 0.03 Orthogroups_2024-Update
Seita.5G332100.1 No alias mRNA decay factor *(PAT1) 0.03 Orthogroups_2024-Update
evm.model.tig00021357.9 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!