Sobic.003G316500.1

Description : chromatin remodeling factor *(Ris1)

Gene families : OG_42_0001683 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001683_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.003G316500.1
Cluster	HCAA Clusters: Cluster_31

Target	Alias	Description	ECC score	Gene Family Method
At1g61140	No alias	SNF2 domain-containing protein / helicase...	0.05	Orthogroups_2024-Update
At3g20010	No alias	Helicase-like transcription factor CHR27...	0.03	Orthogroups_2024-Update
Bradi2g51727	No alias	SNF2 domain-containing protein / helicase...	0.03	Orthogroups_2024-Update
Bradi5g22745	No alias	SNF2 domain-containing protein / helicase...	0.03	Orthogroups_2024-Update
Brara.F00312.1	No alias	chromatin remodeling factor *(Ris1)	0.03	Orthogroups_2024-Update
Glyma.07G192500	No alias	SNF2 domain-containing protein / helicase...	0.03	Orthogroups_2024-Update
Glyma.10G288200	No alias	SNF2 domain-containing protein / helicase...	0.04	Orthogroups_2024-Update
Glyma.15G070100	No alias	SNF2 domain-containing protein / helicase...	0.05	Orthogroups_2024-Update
LOC_Os01g57110	No alias	SNF2 family N-terminal domain containing protein, expressed	0.02	Orthogroups_2024-Update
Seita.5G339900.1	No alias	chromatin remodeling factor *(Ris1)	0.02	Orthogroups_2024-Update
Sobic.006G225700.1	No alias	chromatin remodeling factor *(Rad5) & chromatin...	0.03	Orthogroups_2024-Update
evm.model.tig00021014.10	No alias	(at5g22750 : 175.0) DNA repair gene. gamma-radiation...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	16Dec
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0004527	exonuclease activity	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
MF	GO:0005516	calmodulin binding	IEP	Predicted GO
BP	GO:0010921	regulation of phosphatase activity	IEP	Predicted GO
BP	GO:0019220	regulation of phosphate metabolic process	IEP	Predicted GO
MF	GO:0019899	enzyme binding	IEP	Predicted GO
MF	GO:0019902	phosphatase binding	IEP	Predicted GO
MF	GO:0019903	protein phosphatase binding	IEP	Predicted GO
BP	GO:0031399	regulation of protein modification process	IEP	Predicted GO
BP	GO:0032268	regulation of cellular protein metabolic process	IEP	Predicted GO
BP	GO:0035303	regulation of dephosphorylation	IEP	Predicted GO
BP	GO:0035304	regulation of protein dephosphorylation	IEP	Predicted GO
BP	GO:0043666	regulation of phosphoprotein phosphatase activity	IEP	Predicted GO
BP	GO:0050790	regulation of catalytic activity	IEP	Predicted GO
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	Predicted GO
BP	GO:0051246	regulation of protein metabolic process	IEP	Predicted GO
BP	GO:0051336	regulation of hydrolase activity	IEP	Predicted GO
BP	GO:0065009	regulation of molecular function	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	1103	1202
IPR000330	SNF2_N	538	927

External Links

No external refs found!