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  5. Sobic.003G322532.1

Sobic.003G322532.1


Description : component *(eS25) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0001610 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001610_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G322532.1
Cluster HCAA Clusters: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
172404 No alias Ribosomal protein S25 family protein 0.12 Orthogroups_2024-Update
Bradi3g42900 No alias Ribosomal protein S25 family protein 0.12 Orthogroups_2024-Update
Bradi4g38580 No alias Ribosomal protein S25 family protein 0.1 Orthogroups_2024-Update
Brara.A00031.1 No alias component *(eS25) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
Brara.C04140.1 No alias component *(eS25) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update
Brara.D01272.1 No alias component *(eS25) of small ribosomal-subunit (SSU) proteome 0.14 Orthogroups_2024-Update
Brara.F03876.1 No alias component *(eS25) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Brara.H01813.1 No alias component *(eS25) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Brara.I04632.1 No alias component *(eS25) of small ribosomal-subunit (SSU) proteome 0.09 Orthogroups_2024-Update
Cre08.g382500 No alias Ribosomal protein S25 family protein 0.11 Orthogroups_2024-Update
GRMZM2G057608 No alias Ribosomal protein S25 family protein 0.04 Orthogroups_2024-Update
GRMZM2G084868 No alias Function unknown 0.06 Orthogroups_2024-Update
GRMZM2G139349 No alias Ribosomal protein S25 family protein 0.05 Orthogroups_2024-Update
Glyma.04G011100 No alias Ribosomal protein S25 family protein 0.1 Orthogroups_2024-Update
Glyma.06G011000 No alias Ribosomal protein S25 family protein 0.04 Orthogroups_2024-Update
Glyma.11G115400 No alias Ribosomal protein S25 family protein 0.09 Orthogroups_2024-Update
Glyma.12G041300 No alias Ribosomal protein S25 family protein 0.06 Orthogroups_2024-Update
HORVU4Hr1G001220.3 No alias component *(eS25) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
Kfl00347_0040 kfl00347_0040_v1.1 (at4g39200 : 89.0) Ribosomal protein S25 family protein;... 0.03 Orthogroups_2024-Update
LOC_Os11g05562 No alias 40S ribosomal protein S25, putative, expressed 0.03 Orthogroups_2024-Update
MA_104137g0010 No alias (at2g21580 : 130.0) Ribosomal protein S25 family... 0.06 Orthogroups_2024-Update
Mp4g06120.1 No alias component RPS25 of SSU proteome 0.06 Orthogroups_2024-Update
PSME_00018601-RA No alias (at2g21580 : 128.0) Ribosomal protein S25 family... 0.08 Orthogroups_2024-Update
Potri.004G157200 No alias Ribosomal protein S25 family protein 0.04 Orthogroups_2024-Update
Potri.009G118900 No alias Ribosomal protein S25 family protein 0.05 Orthogroups_2024-Update
Pp1s21_4V6 No alias 40s ribosomal protein 0.12 Orthogroups_2024-Update
Pp1s26_213V6 No alias 40s ribosomal protein 0.12 Orthogroups_2024-Update
Pp1s30_212V6 No alias 40s ribosomal protein 0.08 Orthogroups_2024-Update
Pp1s36_84V6 No alias 40s ribosomal protein 0.1 Orthogroups_2024-Update
Seita.2G134200.1 No alias component *(eS25) of small ribosomal-subunit (SSU) proteome 0.11 Orthogroups_2024-Update
Seita.6G248800.1 No alias component *(eS25) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update
Sobic.003G338966.1 No alias component *(eS25) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
Solyc02g069850 No alias ribosomal protein S25 0.14 Orthogroups_2024-Update
Solyc10g052660 No alias ribosomal protein S25 0.04 Orthogroups_2024-Update
Sopen01g012450 No alias S25 ribosomal protein 0.09 Orthogroups_2024-Update
Sopen02g019010 No alias S25 ribosomal protein 0.09 Orthogroups_2024-Update
Sopen06g020450 No alias S25 ribosomal protein 0.09 Orthogroups_2024-Update
Sopen10g017830 No alias S25 ribosomal protein 0.09 Orthogroups_2024-Update
Sopen10g023380 No alias S25 ribosomal protein 0.13 Orthogroups_2024-Update
evm.model.contig_2033.4 No alias (at4g34555 : 106.0) Ribosomal protein S25 family... 0.14 Orthogroups_2024-Update
evm.model.tig00000037.5 No alias (at4g39200 : 85.1) Ribosomal protein S25 family protein;... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004590 orotidine-5'-phosphate decarboxylase activity IEP Predicted GO
MF GO:0004668 protein-arginine deiminase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006206 pyrimidine nucleobase metabolic process IEP Predicted GO
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006595 polyamine metabolic process IEP Predicted GO
BP GO:0006596 polyamine biosynthetic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009112 nucleobase metabolic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
BP GO:0009445 putrescine metabolic process IEP Predicted GO
BP GO:0009446 putrescine biosynthetic process IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046112 nucleobase biosynthetic process IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
BP GO:0097164 ammonium ion metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004977 Ribosomal_S25 157 255
No external refs found!