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  5. Sobic.003G332900.1

Sobic.003G332900.1


Description : snoRNP rRNA methylation complex assembly factor *(NUFIP)


Gene families : OG_42_0006668 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006668_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G332900.1
Cluster HCAA Clusters: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
At5g18440 No alias NUFIP [Source:UniProtKB/TrEMBL;Acc:A0A178UB40] 0.09 Orthogroups_2024-Update
Bradi2g53107 No alias Function unknown 0.1 Orthogroups_2024-Update
HORVU3Hr1G079780.1 No alias snoRNP rRNA methylation complex assembly factor *(NUFIP) 0.07 Orthogroups_2024-Update
Potri.008G012200 No alias Function unknown 0.05 Orthogroups_2024-Update
Potri.010G246500 No alias Function unknown 0.03 Orthogroups_2024-Update
Seita.5G357000.1 No alias snoRNP rRNA methylation complex assembly factor *(NUFIP) 0.12 Orthogroups_2024-Update
Solyc01g096920 No alias Nuclear fragile X mental retardation-interacting protein... 0.09 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR019496 NUFIP1_cons_dom 301 339
No external refs found!