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  5. Sobic.003G338801.1

Sobic.003G338801.1


Description : alpha-class expansin


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G338801.1
Cluster HCAA Clusters: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
143857 No alias expansin A4 0.03 Orthogroups_2024-Update
419575 No alias expansin A16 0.03 Orthogroups_2024-Update
75237 No alias expansin A7 0.02 Orthogroups_2024-Update
At1g69530 No alias AT1G69530 protein [Source:UniProtKB/TrEMBL;Acc:C0Z241] 0.03 Orthogroups_2024-Update
Bradi2g53580 No alias expansin A8 0.04 Orthogroups_2024-Update
Bradi3g09950 No alias expansin 11 0.03 Orthogroups_2024-Update
Brara.C02080.1 No alias alpha-class expansin 0.04 Orthogroups_2024-Update
Brara.E00178.1 No alias alpha-class expansin 0.04 Orthogroups_2024-Update
Brara.E00745.1 No alias alpha-class expansin 0.04 Orthogroups_2024-Update
Brara.F03107.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
GRMZM2G450546 No alias expansin 11 0.03 Orthogroups_2024-Update
Kfl00557_g9 kfl00557_g9_v1.1 (at1g12560 : 146.0) Member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
LOC_Os01g60770 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g39990 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
MA_30127g0010 No alias (at2g40610 : 411.0) member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
MA_316222g0010 No alias (at2g40610 : 383.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
MA_474624g0010 No alias (q40636|expa2_orysa : 403.0) Expansin-A2 precursor... 0.04 Orthogroups_2024-Update
PSME_00039952-RA No alias (at5g05290 : 224.0) Encodes an expansin. Naming... 0.02 Orthogroups_2024-Update
PSME_00055878-RA No alias (at5g02260 : 159.0) member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
Potri.004G123200 No alias expansin A1 0.04 Orthogroups_2024-Update
Potri.006G086100 No alias Barwin-like endoglucanases superfamily protein 0.03 Orthogroups_2024-Update
Potri.006G108000 No alias expansin A8 0.02 Orthogroups_2024-Update
Potri.008G088300 No alias expansin A1 0.04 Orthogroups_2024-Update
Potri.013G060800 No alias expansin A15 0.02 Orthogroups_2024-Update
Potri.016G135200 No alias expansin A8 0.02 Orthogroups_2024-Update
Pp1s11_29V6 No alias expansin 2 0.02 Orthogroups_2024-Update
Pp1s246_53V6 No alias alpha-expansin 1 0.02 Orthogroups_2024-Update
Pp1s266_66V6 No alias alpha expansin xpa5 0.05 Orthogroups_2024-Update
Pp1s325_11V6 No alias expa6 gene for putative alpha expansin protein family EXPA6 0.02 Orthogroups_2024-Update
Sobic.007G166500.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Solyc06g049050 No alias expansin 2 0.03 Orthogroups_2024-Update
Solyc06g051800 No alias expansin 1 0.03 Orthogroups_2024-Update
Sopen03g034870 No alias Pollen allergen 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003989 acetyl-CoA carboxylase activity IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0008610 lipid biosynthetic process IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
MF GO:0016421 CoA carboxylase activity IEP Predicted GO
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 65 150
IPR007117 Expansin_CBD 161 238
No external refs found!