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  5. Sobic.003G353200.1

Sobic.003G353200.1


Description : lignin laccase & EC_1.10 oxidoreductase acting on diphenol or related substance as donor


Gene families : OG_42_0000051 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000051_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G353200.1
Cluster HCAA Clusters: Cluster_205

Target Alias Description ECC score Gene Family Method Actions
A4A49_13303 No alias laccase-7 0.03 Orthogroups_2024-Update
At5g01190 No alias Laccase-10 [Source:UniProtKB/Swiss-Prot;Acc:Q6ID18] 0.04 Orthogroups_2024-Update
GRMZM2G072808 No alias laccase 17 0.02 Orthogroups_2024-Update
Glyma.07G142500 No alias Laccase/Diphenol oxidase family protein 0.03 Orthogroups_2024-Update
Glyma.18G177200 No alias laccase 17 0.03 Orthogroups_2024-Update
PSME_00028271-RA No alias (at5g05390 : 745.0) putative laccase, a member of... 0.03 Orthogroups_2024-Update
PSME_00043660-RA No alias (at5g03260 : 768.0) putative laccase, a member of... 0.04 Orthogroups_2024-Update
Potri.006G087100 No alias laccase 17 0.02 Orthogroups_2024-Update
Potri.008G064000 No alias Laccase/Diphenol oxidase family protein 0.02 Orthogroups_2024-Update
Potri.010G193100 No alias Laccase/Diphenol oxidase family protein 0.02 Orthogroups_2024-Update
Seita.8G252500.1 No alias lignin laccase & EC_1.10 oxidoreductase acting on... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEA 16Dec
MF GO:0016491 oxidoreductase activity IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR011706 Cu-oxidase_2 430 561
IPR001117 Cu-oxidase 172 322
IPR011707 Cu-oxidase_3 45 159
No external refs found!