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  5. Sobic.003G360400.1

Sobic.003G360400.1


Description : protease *(SPF)


Gene families : OG_42_0000863 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000863_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G360400.1
Cluster HCAA Clusters: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
402785 No alias Cysteine proteinases superfamily protein 0.03 Orthogroups_2024-Update
A4A49_04116 No alias ubiquitin-like-specific protease 1d 0.03 Orthogroups_2024-Update
Cre06.g278197 No alias Cysteine proteinases superfamily protein 0.02 Orthogroups_2024-Update
Glyma.06G095600 No alias Cysteine proteinases superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G137700 No alias UB-like protease 1D 0.03 Orthogroups_2024-Update
Glyma.18G281500 No alias Cysteine proteinases superfamily protein 0.03 Orthogroups_2024-Update
Seita.9G145100.1 No alias protease *(SPF) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006508 proteolysis IEA 16Dec
MF GO:0008234 cysteine-type peptidase activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006354 DNA-templated transcription, elongation IEP Predicted GO
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
CC GO:0016593 Cdc73/Paf1 complex IEP Predicted GO
CC GO:0031011 Ino80 complex IEP Predicted GO
CC GO:0033202 DNA helicase complex IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0070603 SWI/SNF superfamily-type complex IEP Predicted GO
CC GO:0097346 INO80-type complex IEP Predicted GO
CC GO:1904949 ATPase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR003653 Peptidase_C48_C 311 499
No external refs found!