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  5. Sobic.003G363600.1

Sobic.003G363600.1


Description : TGA-type transcription factor


Gene families : OG_42_0012363 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0012363_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G363600.1
Cluster HCAA Clusters: Cluster_140


Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA 16Dec
BP GO:0006351 transcription, DNA-templated IEA 16Dec
BP GO:0006355 regulation of transcription, DNA-templated IEA 16Dec
MF GO:0043565 sequence-specific DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000966 RNA 5'-end processing IEP Predicted GO
BP GO:0001682 tRNA 5'-leader removal IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
BP GO:0007275 multicellular organism development IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Predicted GO
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
CC GO:0030677 ribonuclease P complex IEP Predicted GO
BP GO:0032501 multicellular organismal process IEP Predicted GO
BP GO:0032502 developmental process IEP Predicted GO
BP GO:0034471 ncRNA 5'-end processing IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
BP GO:0048856 anatomical structure development IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
BP GO:0099116 tRNA 5'-end processing IEP Predicted GO
CC GO:1902555 endoribonuclease complex IEP Predicted GO
CC GO:1905348 endonuclease complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004827 bZIP 223 253
IPR025422 TGA_domain 305 379
No external refs found!