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  5. Sobic.003G373600.1

Sobic.003G373600.1


Description : serine hydroxymethyltransferase *(SHM) & serine hydroxymethyltransferase *(MSA1) & EC_2.1 transferase transferring one-carbon group


Gene families : OG_42_0000626 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000626_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G373600.1
Cluster HCAA Clusters: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
90314 No alias serine hydroxymethyltransferase 6 0.05 Orthogroups_2024-Update
Bradi2g56557 No alias serine hydroxymethyltransferase 7 0.07 Orthogroups_2024-Update
Brara.H00601.1 No alias serine hydroxymethyltransferase *(SHM) & serine... 0.06 Orthogroups_2024-Update
MA_11357g0010 No alias (at4g13930 : 800.0) Encodes a serine... 0.02 Orthogroups_2024-Update
Mp2g07660.1 No alias serine hydroxymethyltransferase 0.02 Orthogroups_2024-Update
PSME_00047747-RA No alias (at4g13930 : 784.0) Encodes a serine... 0.02 Orthogroups_2024-Update
Potri.001G212000 No alias serine hydroxymethyltransferase 6 0.04 Orthogroups_2024-Update
Potri.002G090200 No alias serine hydroxymethyltransferase 7 0.08 Orthogroups_2024-Update
Potri.005G170800 No alias serine hydroxymethyltransferase 7 0.08 Orthogroups_2024-Update
Seita.8G115500.1 No alias serine hydroxymethyltransferase *(SHM) & EC_2.1... 0.02 Orthogroups_2024-Update
Solyc01g104000 No alias Serine hydroxymethyltransferase (AHRD V3.3 *** K4B1X5_SOLLC) 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Predicted GO
MF GO:0004867 serine-type endopeptidase inhibitor activity IEP Predicted GO
MF GO:0005375 copper ion transmembrane transporter activity IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
BP GO:0006825 copper ion transport IEP Predicted GO
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predicted GO
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016872 intramolecular lyase activity IEP Predicted GO
BP GO:0035434 copper ion transmembrane transport IEP Predicted GO
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
InterPro domains Description Start Stop
IPR039429 SHMT-like_dom 137 540
No external refs found!