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  5. Sobic.003G393800.1

Sobic.003G393800.1


Description : component *(bTHXc) of small plastid ribosomal-subunit proteome


Gene families : OG_42_0003423 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003423_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G393800.1
Cluster HCAA Clusters: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
Bradi1g38630 No alias plastid-specific ribosomal protein 4 0.08 Orthogroups_2024-Update
Brara.E00706.1 No alias component *(bTHXc) of small plastid ribosomal-subunit proteome 0.07 Orthogroups_2024-Update
GRMZM2G058250 No alias plastid-specific ribosomal protein 4 0.08 Orthogroups_2024-Update
Glyma.03G063200 No alias plastid-specific ribosomal protein 4 0.03 Orthogroups_2024-Update
HORVU7Hr1G079190.2 No alias component *(bTHXc) of small plastid ribosomal-subunit proteome 0.13 Orthogroups_2024-Update
Kfl00060_0270 kfl00060_0270_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
MA_202598g0010 No alias (at2g38140 : 82.0) plastid-specific ribosomal protein 4... 0.07 Orthogroups_2024-Update
Mp1g04130.1 No alias component psPSRP4 of small ribosomal subunit proteome 0.02 Orthogroups_2024-Update
Potri.009G124700 No alias Function unknown 0.03 Orthogroups_2024-Update
Potri.016G113700 No alias plastid-specific ribosomal protein 4 0.05 Orthogroups_2024-Update
Pp1s258_80V6 No alias 30s ribosomal protein s31 0.03 Orthogroups_2024-Update
Pp1s29_213V6 No alias F16M14.7; chloroplast 30S ribosomal protein S31 (PSRP4)... 0.03 Orthogroups_2024-Update
Seita.4G218100.1 No alias component *(bTHXc) of small plastid ribosomal-subunit proteome 0.27 Orthogroups_2024-Update
Solyc05g052710 No alias 30S ribosomal protein S31 (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Sopen05g031230 No alias hypothetical protein 0.11 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005840 ribosome IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006605 protein targeting IEP Predicted GO
BP GO:0006612 protein targeting to membrane IEP Predicted GO
BP GO:0006613 cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008312 7S RNA binding IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
BP GO:0045047 protein targeting to ER IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
CC GO:0048500 signal recognition particle IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0070972 protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0072657 protein localization to membrane IEP Predicted GO
BP GO:0090150 establishment of protein localization to membrane IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR030826 Ribo_THX 21 112
No external refs found!