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Description : HD2-type histone deacetylase *(HD2/HDT)
Gene families : OG_42_0001839 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001839_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor: Sobic.003G396600.1 | |
| Cluster | HCAA Clusters: Cluster_66 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_64689 | No alias | histone deacetylase hdt1 | 0.03 | Orthogroups_2024-Update | |
| At2g27840 | No alias | Histone deacetylase HDT4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M4T3] | 0.05 | Orthogroups_2024-Update | |
| At3g44750 | No alias | Histone deacetylase HDT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVE6] | 0.07 | Orthogroups_2024-Update | |
| Bradi2g14120 | No alias | histone deacetylase 2B | 0.1 | Orthogroups_2024-Update | |
| Brara.B00987.1 | No alias | HD2-type histone deacetylase *(HD2/HDT) | 0.05 | Orthogroups_2024-Update | |
| Brara.C01007.1 | No alias | HD2-type histone deacetylase *(HD2/HDT) | 0.06 | Orthogroups_2024-Update | |
| Brara.D01665.1 | No alias | HD2-type histone deacetylase *(HD2/HDT) | 0.05 | Orthogroups_2024-Update | |
| GRMZM2G100146 | No alias | histone deacetylase 3 | 0.03 | Orthogroups_2024-Update | |
| Glyma.12G181400 | No alias | histone deacetylase 2C | 0.06 | Orthogroups_2024-Update | |
| Glyma.13G319500 | No alias | histone deacetylase 2C | 0.06 | Orthogroups_2024-Update | |
| Kfl00300_0030 | kfl00300_0030_v1.1 | no hits & (original description: no original description) | 0.02 | Orthogroups_2024-Update | |
| LOC_Os05g51830 | No alias | ZOS5-12 - C2H2 zinc finger protein, expressed | 0.03 | Orthogroups_2024-Update | |
| MA_601245g0010 | No alias | (original description: no original description) | 0.03 | Orthogroups_2024-Update | |
| Mp5g10240.1 | No alias | histone deacetylase (HDT/HD2) | 0.05 | Orthogroups_2024-Update | |
| Potri.004G188800 | No alias | histone deacetylase 2C | 0.03 | Orthogroups_2024-Update | |
| Potri.009G149400 | No alias | histone deacetylase 3 | 0.05 | Orthogroups_2024-Update | |
| Pp1s7_389V6 | No alias | histone deacetylase | 0.03 | Orthogroups_2024-Update | |
| Seita.3G117500.1 | No alias | HD2-type histone deacetylase *(HD2/HDT) | 0.07 | Orthogroups_2024-Update | |
| Seita.5G422200.1 | No alias | HD2-type histone deacetylase *(HD2/HDT) | 0.14 | Orthogroups_2024-Update | |
| Solyc09g009030 | No alias | Histone deacetylase HDT1 (AHRD V3.3 *** HDT1_SOLCH) | 0.09 | Orthogroups_2024-Update | |
| evm.model.tig00000388.65 | No alias | (at4g25340 : 88.6) Encodes a member of the FKBP-type... | 0.02 | Orthogroups_2024-Update | |
| evm.model.tig00000983.33 | No alias | no hits & (original description: no original description) | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001510 | RNA methylation | IEP | Predicted GO |
| BP | GO:0001522 | pseudouridine synthesis | IEP | Predicted GO |
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0003697 | single-stranded DNA binding | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | Predicted GO |
| MF | GO:0004014 | adenosylmethionine decarboxylase activity | IEP | Predicted GO |
| MF | GO:0004421 | hydroxymethylglutaryl-CoA synthase activity | IEP | Predicted GO |
| MF | GO:0004809 | tRNA (guanine-N2-)-methyltransferase activity | IEP | Predicted GO |
| MF | GO:0005488 | binding | IEP | Predicted GO |
| CC | GO:0005741 | mitochondrial outer membrane | IEP | Predicted GO |
| CC | GO:0005759 | mitochondrial matrix | IEP | Predicted GO |
| BP | GO:0006072 | glycerol-3-phosphate metabolic process | IEP | Predicted GO |
| BP | GO:0006084 | acetyl-CoA metabolic process | IEP | Predicted GO |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
| BP | GO:0006396 | RNA processing | IEP | Predicted GO |
| BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
| BP | GO:0006400 | tRNA modification | IEP | Predicted GO |
| BP | GO:0006576 | cellular biogenic amine metabolic process | IEP | Predicted GO |
| BP | GO:0006595 | polyamine metabolic process | IEP | Predicted GO |
| BP | GO:0006596 | polyamine biosynthetic process | IEP | Predicted GO |
| BP | GO:0006597 | spermine biosynthetic process | IEP | Predicted GO |
| BP | GO:0006637 | acyl-CoA metabolic process | IEP | Predicted GO |
| BP | GO:0006721 | terpenoid metabolic process | IEP | Predicted GO |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0008033 | tRNA processing | IEP | Predicted GO |
| MF | GO:0008061 | chitin binding | IEP | Predicted GO |
| MF | GO:0008097 | 5S rRNA binding | IEP | Predicted GO |
| BP | GO:0008152 | metabolic process | IEP | Predicted GO |
| MF | GO:0008168 | methyltransferase activity | IEP | Predicted GO |
| MF | GO:0008175 | tRNA methyltransferase activity | IEP | Predicted GO |
| BP | GO:0008215 | spermine metabolic process | IEP | Predicted GO |
| BP | GO:0008216 | spermidine metabolic process | IEP | Predicted GO |
| BP | GO:0008295 | spermidine biosynthetic process | IEP | Predicted GO |
| MF | GO:0008519 | ammonium transmembrane transporter activity | IEP | Predicted GO |
| BP | GO:0009309 | amine biosynthetic process | IEP | Predicted GO |
| BP | GO:0009451 | RNA modification | IEP | Predicted GO |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | Predicted GO |
| BP | GO:0009987 | cellular process | IEP | Predicted GO |
| BP | GO:0010142 | farnesyl diphosphate biosynthetic process, mevalonate pathway | IEP | Predicted GO |
| BP | GO:0015696 | ammonium transport | IEP | Predicted GO |
| BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
| BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
| BP | GO:0016114 | terpenoid biosynthetic process | IEP | Predicted GO |
| MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | Predicted GO |
| MF | GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | IEP | Predicted GO |
| MF | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | IEP | Predicted GO |
| MF | GO:0016763 | transferase activity, transferring pentosyl groups | IEP | Predicted GO |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Predicted GO |
| MF | GO:0016853 | isomerase activity | IEP | Predicted GO |
| MF | GO:0016866 | intramolecular transferase activity | IEP | Predicted GO |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
| BP | GO:0030488 | tRNA methylation | IEP | Predicted GO |
| CC | GO:0030684 | preribosome | IEP | Predicted GO |
| CC | GO:0031515 | tRNA (m1A) methyltransferase complex | IEP | Predicted GO |
| CC | GO:0031968 | organelle outer membrane | IEP | Predicted GO |
| CC | GO:0031974 | membrane-enclosed lumen | IEP | Predicted GO |
| CC | GO:0032040 | small-subunit processome | IEP | Predicted GO |
| MF | GO:0034061 | DNA polymerase activity | IEP | Predicted GO |
| BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
| CC | GO:0034708 | methyltransferase complex | IEP | Predicted GO |
| BP | GO:0035383 | thioester metabolic process | IEP | Predicted GO |
| BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
| BP | GO:0042401 | cellular biogenic amine biosynthetic process | IEP | Predicted GO |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
| CC | GO:0043233 | organelle lumen | IEP | Predicted GO |
| CC | GO:0043527 | tRNA methyltransferase complex | IEP | Predicted GO |
| BP | GO:0044106 | cellular amine metabolic process | IEP | Predicted GO |
| BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
| BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
| CC | GO:0044429 | mitochondrial part | IEP | Predicted GO |
| CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
| BP | GO:0045337 | farnesyl diphosphate biosynthetic process | IEP | Predicted GO |
| BP | GO:0045338 | farnesyl diphosphate metabolic process | IEP | Predicted GO |
| BP | GO:0046168 | glycerol-3-phosphate catabolic process | IEP | Predicted GO |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
| MF | GO:0046912 | transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer | IEP | Predicted GO |
| MF | GO:0047952 | glycerol-3-phosphate dehydrogenase [NAD(P)+] activity | IEP | Predicted GO |
| MF | GO:0051287 | NAD binding | IEP | Predicted GO |
| BP | GO:0052646 | alditol phosphate metabolic process | IEP | Predicted GO |
| CC | GO:0070013 | intracellular organelle lumen | IEP | Predicted GO |
| BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
| BP | GO:0072488 | ammonium transmembrane transport | IEP | Predicted GO |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
| BP | GO:0097164 | ammonium ion metabolic process | IEP | Predicted GO |
| CC | GO:0098805 | whole membrane | IEP | Predicted GO |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Predicted GO |
| MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
| BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | Predicted GO |
| BP | GO:1901136 | carbohydrate derivative catabolic process | IEP | Predicted GO |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
| BP | GO:1902767 | isoprenoid biosynthetic process via mevalonate | IEP | Predicted GO |
No InterPro domains available for this sequence
| No external refs found! |