1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.003G406600.1

Sobic.003G406600.1


Description : SBP-type transcription factor


Gene families : OG_42_0000135 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000135_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G406600.1
Cluster HCAA Clusters: Cluster_177

Target Alias Description ECC score Gene Family Method Actions
A4A49_21887 No alias squamosa promoter-binding-like protein 9 0.02 Orthogroups_2024-Update
Bradi3g03510 No alias squamosa promoter binding protein-like 2 0.02 Orthogroups_2024-Update
Brara.B01839.1 No alias SBP-type transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G106798 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 Orthogroups_2024-Update
Glyma.03G143100 No alias squamosa promoter binding protein-like 9 0.03 Orthogroups_2024-Update
Glyma.13G274900 No alias squamosa promoter-binding protein-like 12 0.02 Orthogroups_2024-Update
Seita.3G022100.1 No alias SBP-type transcription factor 0.04 Orthogroups_2024-Update
Solyc10g009080 No alias Squamosa promoter binding protein 3 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004185 serine-type carboxypeptidase activity IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0008238 exopeptidase activity IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0070008 serine-type exopeptidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR004333 SBP_dom 97 170
No external refs found!