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  5. Sobic.003G407800.1

Sobic.003G407800.1


Description : scaffold component *(Nop58) of snoRNP rRNA methylation complex


Gene families : OG_42_0003373 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003373_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G407800.1
Cluster HCAA Clusters: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
146841 No alias NOP56-like pre RNA processing ribonucleoprotein 0.12 Orthogroups_2024-Update
At3g05060 No alias Probable nucleolar protein 5-2... 0.07 Orthogroups_2024-Update
Bradi1g18440 No alias NOP56-like pre RNA processing ribonucleoprotein 0.1 Orthogroups_2024-Update
Bradi1g62430 No alias NOP56-like pre RNA processing ribonucleoprotein 0.06 Orthogroups_2024-Update
Brara.F02881.1 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.17 Orthogroups_2024-Update
Brara.I00439.1 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.14 Orthogroups_2024-Update
Cre10.g441400 No alias NOP56-like pre RNA processing ribonucleoprotein 0.05 Orthogroups_2024-Update
GRMZM2G124576 No alias NOP56-like pre RNA processing ribonucleoprotein 0.06 Orthogroups_2024-Update
GRMZM2G125148 No alias NOP56-like pre RNA processing ribonucleoprotein 0.03 Orthogroups_2024-Update
Glyma.12G040200 No alias NOP56-like pre RNA processing ribonucleoprotein 0.03 Orthogroups_2024-Update
HORVU2Hr1G020690.6 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.07 Orthogroups_2024-Update
Kfl00291_0060 kfl00291_0060_v1.... (at3g05060 : 613.0) SAR DNA-binding protein, putative,... 0.03 Orthogroups_2024-Update
LOC_Os03g22730 No alias nucleolar protein NOP5-1, putative, expressed 0.04 Orthogroups_2024-Update
Mp2g00370.1 No alias snoRNP scaffold component Nop58 of snoRNP rRNA... 0.02 Orthogroups_2024-Update
PSME_00000450-RA No alias (at3g05060 : 688.0) SAR DNA-binding protein, putative,... 0.01 Orthogroups_2024-Update
Potri.005G045600 No alias NOP56-like pre RNA processing ribonucleoprotein 0.03 Orthogroups_2024-Update
Pp1s22_229V6 No alias nucleolar protein expressed 0.05 Orthogroups_2024-Update
Seita.9G404600.1 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.24 Orthogroups_2024-Update
Seita.9G404700.1 No alias scaffold component *(Nop58) of snoRNP rRNA methylation complex 0.04 Orthogroups_2024-Update
Solyc05g055880 No alias NOP56-like pre RNA processing ribonucleoprotein (AHRD... 0.06 Orthogroups_2024-Update
Solyc09g083080 No alias MAR-binding protein 0.1 Orthogroups_2024-Update
Sopen05g034280 No alias Putative snoRNA binding domain 0.06 Orthogroups_2024-Update
Sopen09g031960 No alias Putative snoRNA binding domain 0.06 Orthogroups_2024-Update
evm.model.contig_496.10 No alias (at5g27120 : 425.0) SAR DNA-binding protein, putative,... 0.02 Orthogroups_2024-Update
evm.model.tig00021350.31 No alias (at3g05060 : 530.0) SAR DNA-binding protein, putative,... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
MF GO:0035596 methylthiotransferase activity IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0050497 transferase activity, transferring alkylthio groups IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
MF GO:0070037 rRNA (pseudouridine) methyltransferase activity IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002687 Nop_dom 166 395
IPR012974 NOP5_N 2 65
No external refs found!