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  5. Sobic.003G408100.1

Sobic.003G408100.1


Description : component *(eL13) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0002061 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002061_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G408100.1
Cluster HCAA Clusters: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
165483 No alias breast basic conserved 1 0.07 Orthogroups_2024-Update
A4A49_61903 No alias 60s ribosomal protein l13-1 0.13 Orthogroups_2024-Update
At3g49010 No alias 60S ribosomal protein L13... 0.05 Orthogroups_2024-Update
At5g23900 No alias 60S ribosomal protein L13... 0.04 Orthogroups_2024-Update
Bradi3g01600 No alias breast basic conserved 1 0.3 Orthogroups_2024-Update
Bradi3g16170 No alias breast basic conserved 1 0.22 Orthogroups_2024-Update
Brara.A02197.1 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.3 Orthogroups_2024-Update
Brara.F01634.1 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.37 Orthogroups_2024-Update
Brara.F02079.1 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.28 Orthogroups_2024-Update
Brara.I00594.1 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Cre14.g630100 No alias breast basic conserved 1 0.19 Orthogroups_2024-Update
Glyma.04G122700 No alias breast basic conserved 1 0.19 Orthogroups_2024-Update
Glyma.09G214400 No alias breast basic conserved 1 0.15 Orthogroups_2024-Update
Glyma.16G074600 No alias breast basic conserved 1 0.08 Orthogroups_2024-Update
Glyma.16G106300 No alias breast basic conserved 1 0.12 Orthogroups_2024-Update
HORVU6Hr1G009400.2 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.27 Orthogroups_2024-Update
HORVU7Hr1G067060.1 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.24 Orthogroups_2024-Update
Kfl00461_0040 kfl00461_0040_v1.1 (p41129|rl132_brana : 229.0) 60S ribosomal protein L13-2... 0.19 Orthogroups_2024-Update
LOC_Os03g37970 No alias ribosomal protein L13, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os06g02510 No alias ribosomal protein L13, putative, expressed 0.03 Orthogroups_2024-Update
MA_10430790g0030 No alias (at3g49010 : 263.0) Encodes 60S ribosomal protein L13.... 0.09 Orthogroups_2024-Update
Mp1g04920.1 No alias component RPL13 of LSU proteome component 0.11 Orthogroups_2024-Update
Mp2g19790.1 No alias component RPL13 of LSU proteome component 0.23 Orthogroups_2024-Update
PSME_00003763-RA No alias (at3g49010 : 179.0) Encodes 60S ribosomal protein L13.... 0.12 Orthogroups_2024-Update
PSME_00040067-RA No alias (at3g49010 : 296.0) Encodes 60S ribosomal protein L13.... 0.07 Orthogroups_2024-Update
PSME_00045638-RA No alias (at3g49010 : 335.0) Encodes 60S ribosomal protein L13.... 0.09 Orthogroups_2024-Update
Potri.003G102800 No alias breast basic conserved 1 0.15 Orthogroups_2024-Update
Potri.013G027600 No alias breast basic conserved 1 0.07 Orthogroups_2024-Update
Potri.016G082300 No alias breast basic conserved 1 0.1 Orthogroups_2024-Update
Pp1s126_52V6 No alias 60s ribosomal protein l13-2 0.03 Orthogroups_2024-Update
Pp1s21_106V6 No alias 60s ribosomal protein l13-2 0.41 Orthogroups_2024-Update
Pp1s459_9V6 No alias 60s ribosomal protein l13-2 0.33 Orthogroups_2024-Update
Pp1s58_38V6 No alias 60s ribosomal protein l13-2 0.09 Orthogroups_2024-Update
Seita.5G275700.1 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.28 Orthogroups_2024-Update
Seita.5G276200.1 No alias component *(eL13) of large ribosomal-subunit (LSU) proteome 0.23 Orthogroups_2024-Update
Solyc08g075700 No alias 60S ribosomal protein L13 (AHRD V3.3 *** K4CMT7_SOLLC) 0.43 Orthogroups_2024-Update
Solyc12g096150 No alias 60S ribosomal protein L13 (AHRD V3.3 *** K4DH88_SOLLC) 0.19 Orthogroups_2024-Update
Sopen08g024350 No alias Ribosomal protein L13e 0.38 Orthogroups_2024-Update
Sopen12g032030 No alias Ribosomal protein L13e 0.17 Orthogroups_2024-Update
evm.model.contig_2033.18 No alias (at3g49010 : 217.0) Encodes 60S ribosomal protein L13.... 0.5 Orthogroups_2024-Update
evm.model.tig00020629.36 No alias (p41128|rl131_brana : 211.0) 60S ribosomal protein L13-1... 0.3 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
InterPro domains Description Start Stop
IPR001380 Ribosomal_L13e 7 186
No external refs found!