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  5. Sobic.003G417500.1

Sobic.003G417500.1


Description : C2H2 subclass IDD transcription factor


Gene families : OG_42_0000119 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000119_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G417500.1
Cluster HCAA Clusters: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Bradi2g05900 No alias indeterminate(ID)-domain 7 0.06 Orthogroups_2024-Update
Bradi3g51090 No alias indeterminate(ID)-domain 4 0.03 Orthogroups_2024-Update
Bradi4g37540 No alias indeterminate(ID)-domain 7 0.05 Orthogroups_2024-Update
Bradi5g18530 No alias indeterminate(ID)-domain 4 0.06 Orthogroups_2024-Update
GRMZM2G141031 No alias indeterminate(ID)-domain 16 0.03 Orthogroups_2024-Update
Glyma.04G033300 No alias C2H2-like zinc finger protein 0.04 Orthogroups_2024-Update
MA_10428315g0010 No alias (at1g34370 : 211.0) Encodes a putative nuclear... 0.03 Orthogroups_2024-Update
Potri.003G040100 No alias indeterminate(ID)-domain 11 0.03 Orthogroups_2024-Update
Potri.005G027200 No alias indeterminate(ID)-domain 2 0.03 Orthogroups_2024-Update
Seita.1G067600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G504400.1 No alias C2H2 subclass IDD transcription factor & elicitor... 0.03 Orthogroups_2024-Update
Sobic.002G293100.1 No alias C2H2 subclass IDD transcription factor 0.02 Orthogroups_2024-Update
Solyc01g099340 No alias Zinc finger protein (AHRD V3.3 *** E9NZV2_PHAVU) 0.03 Orthogroups_2024-Update
Solyc09g074780 No alias Zinc finger protein (AHRD V3.3 *** E9NZV2_PHAVU) 0.03 Orthogroups_2024-Update
Sopen02g030250 No alias Zinc finger, C2H2 type 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004097 catechol oxidase activity IEP Predicted GO
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0005986 sucrose biosynthetic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
MF GO:0010333 terpene synthase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016830 carbon-carbon lyase activity IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
MF GO:0019203 carbohydrate phosphatase activity IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050307 sucrose-phosphate phosphatase activity IEP Predicted GO
MF GO:0050308 sugar-phosphatase activity IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!