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  5. Sobic.003G437500.1

Sobic.003G437500.1


Description : Qc-type SYP6-group component of SNARE membrane fusion complex


Gene families : OG_42_0003206 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003206_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.003G437500.1
Cluster HCAA Clusters: Cluster_166

Target Alias Description ECC score Gene Family Method Actions
PSME_00023690-RA No alias (at1g28490 : 169.0) Encodes one of 24 Arabidopsis... 0.03 Orthogroups_2024-Update
evm.model.tig00000571.43 No alias (at1g28490 : 106.0) Encodes one of 24 Arabidopsis... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA 16Dec
BP GO:0048193 Golgi vesicle transport IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR015260 Syntaxin-6_N 6 99
IPR000727 T_SNARE_dom 177 227
No external refs found!