At3g53650

Description : Histone H2B.8 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFF6]

Gene families : OG_42_0000153 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000153_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Arabidopsis release: At3g53650
Cluster	HCCA clusters: Cluster_114

Target	Alias	Description	ECC score	Gene Family Method
At3g09480	No alias	Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V4X7]	0.03	Orthogroups_2024-Update
Brara.C02399.1	No alias	histone *(H2B)	0.04	Orthogroups_2024-Update
Brara.J01445.1	No alias	histone *(H2B)	0.04	Orthogroups_2024-Update
Cre06.g264800	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Cre06.g266750	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre06.g273850	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre06.g274250	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Cre06.g274750	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Cre06.g276900	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre12.g504550	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre12.g504700	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre12.g506200	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre17.g708600	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
Cre17.g711750	No alias	Histone superfamily protein	0.02	Orthogroups_2024-Update
GRMZM2G306258	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Glyma.10G198500	No alias	Histone superfamily protein	0.05	Orthogroups_2024-Update
Glyma.11G141600	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
Glyma.20G191600	No alias	Histone superfamily protein	0.03	Orthogroups_2024-Update
HORVU1Hr1G078480.6	No alias	histone *(H2B)	0.02	Orthogroups_2024-Update
LOC_Os01g05900	No alias	Core histone H2A/H2B/H3/H4 domain containing protein,...	0.03	Orthogroups_2024-Update
LOC_Os01g05970	No alias	OsFBO1 - F-box and other domain containing protein, expressed	0.02	Orthogroups_2024-Update
MA_6078786g0010	No alias	(p54347\|h2b4_chlre : 155.0) Histone H2B.4 (H2B-IV) -...	0.03	Orthogroups_2024-Update
PSME_00025825-RA	No alias	(at5g22880 : 173.0) Encodes a histone 2B (H2B) protein....	0.03	Orthogroups_2024-Update
Solyc05g055440	No alias	Histone H2B (AHRD V3.3 *** K4C2M0_SOLLC)	0.02	Orthogroups_2024-Update
Solyc06g075800	No alias	Histone H2B (AHRD V3.3 *** K4C9U5_SOLLC)	0.02	Orthogroups_2024-Update
Solyc11g007930	No alias	Histone H2B (AHRD V3.3 *** K4D554_SOLLC)	0.02	Orthogroups_2024-Update
Sopen05g033890	No alias	Core histone H2A/H2B/H3/H4	0.03	Orthogroups_2024-Update
Sopen06g032230	No alias	Core histone H2A/H2B/H3/H4	0.03	Orthogroups_2024-Update
Sopen12g006850	No alias	Core histone H2A/H2B/H3/H4	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000502	proteasome complex	IEP	Predicted GO
MF	GO:0001671	ATPase activator activity	IEP	Predicted GO
MF	GO:0003682	chromatin binding	IEP	Predicted GO
BP	GO:0006813	potassium ion transport	IEP	Predicted GO
MF	GO:0008047	enzyme activator activity	IEP	Predicted GO
MF	GO:0008168	methyltransferase activity	IEP	Predicted GO
BP	GO:0009894	regulation of catabolic process	IEP	Predicted GO
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0016597	amino acid binding	IEP	Predicted GO
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Predicted GO
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	Predicted GO
MF	GO:0016743	carboxyl- or carbamoyltransferase activity	IEP	Predicted GO
MF	GO:0030234	enzyme regulator activity	IEP	Predicted GO
MF	GO:0031072	heat shock protein binding	IEP	Predicted GO
MF	GO:0031406	carboxylic acid binding	IEP	Predicted GO
BP	GO:0042176	regulation of protein catabolic process	IEP	Predicted GO
MF	GO:0043177	organic acid binding	IEP	Predicted GO
MF	GO:0051082	unfolded protein binding	IEP	Predicted GO
MF	GO:0051087	chaperone binding	IEP	Predicted GO
BP	GO:0051246	regulation of protein metabolic process	IEP	Predicted GO
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Predicted GO
MF	GO:0060590	ATPase regulator activity	IEP	Predicted GO
BP	GO:0071805	potassium ion transmembrane transport	IEP	Predicted GO
CC	GO:1905368	peptidase complex	IEP	Predicted GO
CC	GO:1905369	endopeptidase complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR007125	Histone_H2A/H2B/H3	5	114

External Links

No external refs found!

At3g53650

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation