1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.004G005400.1

Sobic.004G005400.1


Description : RNA helicase *(Brr2)


Gene families : OG_42_0000868 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000868_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G005400.1
Cluster HCAA Clusters: Cluster_247

Target Alias Description ECC score Gene Family Method Actions
Brara.B01383.1 No alias RNA helicase *(Brr2) 0.02 Orthogroups_2024-Update
Kfl00102_0100 kfl00102_0100_v1.1 (at1g20960 : 2806.0) embryo defective 1507 (emb1507);... 0.01 Orthogroups_2024-Update
Kfl00417_0080 kfl00417_0080_v1.1 (at5g61140 : 2262.0) Encodes a predicted protein with... 0.02 Orthogroups_2024-Update
Mp1g06890.1 No alias RNA helicase (Brr2) 0.01 Orthogroups_2024-Update
Seita.9G492000.1 No alias RNA helicase *(Brr2) 0.02 Orthogroups_2024-Update
Sobic.001G457800.2 No alias RNA helicase *(Brr2) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
BP GO:0006013 mannose metabolic process IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 516 690
IPR011545 DEAD/DEAH_box_helicase_dom 1360 1529
IPR004179 Sec63-dom 1845 2163
IPR004179 Sec63-dom 1013 1309
IPR001650 Helicase_C 747 889
No external refs found!