Description : pre-rRNA processing endonuclease involved in ITS1 rRNA removal *(NOB1)
Gene families : OG_42_0005489 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005489_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Sorghum bicolor: Sobic.004G011000.1 | |
Cluster | HCAA Clusters: Cluster_75 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
At5g41190 | No alias | RNA-binding NOB1-like protein... | 0.03 | Orthogroups_2024-Update | |
Brara.D01131.1 | No alias | pre-rRNA processing endonuclease involved in ITS1 rRNA... | 0.03 | Orthogroups_2024-Update | |
Brara.G01511.1 | No alias | pre-rRNA processing endonuclease involved in ITS1 rRNA... | 0.03 | Orthogroups_2024-Update | |
Cre01.g031750 | No alias | Function unknown | 0.03 | Orthogroups_2024-Update | |
GRMZM2G079143 | No alias | Function unknown | 0.03 | Orthogroups_2024-Update | |
Glyma.08G013300 | No alias | Function unknown | 0.03 | Orthogroups_2024-Update | |
PSME_00045468-RA | No alias | (at5g41190 : 464.0) CONTAINS InterPro DOMAIN/s: Nin one... | 0.03 | Orthogroups_2024-Update | |
Seita.1G116900.1 | No alias | pre-rRNA processing endonuclease involved in ITS1 rRNA... | 0.1 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000350 | generation of catalytic spliceosome for second transesterification step | IEP | Predicted GO |
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003922 | GMP synthase (glutamine-hydrolyzing) activity | IEP | Predicted GO |
MF | GO:0005488 | binding | IEP | Predicted GO |
CC | GO:0005643 | nuclear pore | IEP | Predicted GO |
CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Predicted GO |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006177 | GMP biosynthetic process | IEP | Predicted GO |
BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
BP | GO:0006396 | RNA processing | IEP | Predicted GO |
BP | GO:0009116 | nucleoside metabolic process | IEP | Predicted GO |
BP | GO:0009119 | ribonucleoside metabolic process | IEP | Predicted GO |
BP | GO:0009163 | nucleoside biosynthetic process | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
MF | GO:0016782 | transferase activity, transferring sulfur-containing groups | IEP | Predicted GO |
MF | GO:0016874 | ligase activity | IEP | Predicted GO |
MF | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | IEP | Predicted GO |
MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | Predicted GO |
MF | GO:0031267 | small GTPase binding | IEP | Predicted GO |
BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
MF | GO:0035596 | methylthiotransferase activity | IEP | Predicted GO |
BP | GO:0042278 | purine nucleoside metabolic process | IEP | Predicted GO |
BP | GO:0042451 | purine nucleoside biosynthetic process | IEP | Predicted GO |
BP | GO:0042455 | ribonucleoside biosynthetic process | IEP | Predicted GO |
BP | GO:0046037 | GMP metabolic process | IEP | Predicted GO |
BP | GO:0046128 | purine ribonucleoside metabolic process | IEP | Predicted GO |
BP | GO:0046129 | purine ribonucleoside biosynthetic process | IEP | Predicted GO |
BP | GO:0046907 | intracellular transport | IEP | Predicted GO |
MF | GO:0050497 | transferase activity, transferring alkylthio groups | IEP | Predicted GO |
MF | GO:0051539 | 4 iron, 4 sulfur cluster binding | IEP | Predicted GO |
BP | GO:0051641 | cellular localization | IEP | Predicted GO |
BP | GO:0051649 | establishment of localization in cell | IEP | Predicted GO |
BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | Predicted GO |
MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
BP | GO:1901068 | guanosine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:1901070 | guanosine-containing compound biosynthetic process | IEP | Predicted GO |
MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
BP | GO:1901657 | glycosyl compound metabolic process | IEP | Predicted GO |
BP | GO:1901659 | glycosyl compound biosynthetic process | IEP | Predicted GO |
No external refs found! |