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  5. At3g53820

At3g53820


Description : C2H2 and C2HC zinc fingers superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9M344]


Gene families : OG_42_0000024 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000024_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g53820
Cluster HCCA clusters: Cluster_195

Target Alias Description ECC score Gene Family Method Actions
Bradi1g14810 No alias zinc finger protein 7 0.02 Orthogroups_2024-Update
Glyma.18G036000 No alias zinc-finger protein 10 0.04 Orthogroups_2024-Update
Potri.002G199200 No alias zinc finger protein 6 0.02 Orthogroups_2024-Update
Potri.005G221500 No alias C2H2 and C2HC zinc fingers superfamily protein 0.05 Orthogroups_2024-Update
Seita.5G090200.1 No alias C2H2 subclass ZFP transcription factor 0.03 Orthogroups_2024-Update
Seita.9G170900.1 No alias C2H2 subclass ZFP transcription factor 0.04 Orthogroups_2024-Update
Solyc05g009380 No alias lyrate 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
MF GO:0098599 palmitoyl hydrolase activity IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!