Sobic.004G013200.2

Description : ligand-gated cation channel *(GLR)

Gene families : OG_42_0000065 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000065_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.004G013200.2
Cluster	HCAA Clusters: Cluster_235

Target	Alias	Description	ECC score	Gene Family Method
At5g27100	No alias	Glutamate receptor 2.1 [Source:UniProtKB/Swiss-Prot;Acc:O04660]	0.02	Orthogroups_2024-Update
Bradi1g59600	No alias	glutamate receptor 3.4	0.05	Orthogroups_2024-Update
Brara.D01745.1	No alias	ligand-gated cation channel *(GLR)	0.04	Orthogroups_2024-Update
Brara.F03008.1	No alias	ligand-gated cation channel *(GLR)	0.04	Orthogroups_2024-Update
Glyma.07G226400	No alias	glutamate receptor 2.8	0.02	Orthogroups_2024-Update
Glyma.13G093332	No alias	glutamate receptor 2.5	0.03	Orthogroups_2024-Update
Glyma.13G172100	No alias	glutamate receptor 2.7	0.05	Orthogroups_2024-Update
Glyma.13G233400	No alias	glutamate receptor 2.7	0.04	Orthogroups_2024-Update
HORVU5Hr1G010420.23	No alias	ligand-gated cation channel *(GLR)	0.04	Orthogroups_2024-Update
HORVU5Hr1G063420.2	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
LOC_Os06g06130	No alias	glutamate receptor, putative, expressed	0.02	Orthogroups_2024-Update
PSME_00001098-RA	No alias	(at2g29120 : 637.0) member of Putative ligand-gated ion...	0.02	Orthogroups_2024-Update
PSME_00001292-RA	No alias	(at4g35290 : 567.0) Encodes a putative glutamate...	0.02	Orthogroups_2024-Update
PSME_00027644-RA	No alias	(at2g29120 : 490.0) member of Putative ligand-gated ion...	0.03	Orthogroups_2024-Update
Potri.004G052600	No alias	glutamate receptor 2.7	0.04	Orthogroups_2024-Update
Potri.011G062750	No alias	glutamate receptor 2.7	0.02	Orthogroups_2024-Update
Seita.1G009400.1	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
Sobic.002G208301.1	No alias	ligand-gated cation channel *(GLR)	0.04	Orthogroups_2024-Update
Sobic.002G209100.1	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update
Sobic.004G324000.1	No alias	ligand-gated cation channel *(GLR)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	ion channel activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015276	ligand-gated ion channel activity	IEA	16Dec
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	16Dec
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022834	ligand-gated channel activity	None	Extended
MF	GO:0022836	gated channel activity	None	Extended
MF	GO:0022838	substrate-specific channel activity	None	Extended
MF	GO:0022839	ion gated channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006417	regulation of translation	IEP	Predicted GO
BP	GO:0009889	regulation of biosynthetic process	IEP	Predicted GO
BP	GO:0009890	negative regulation of biosynthetic process	IEP	Predicted GO
BP	GO:0009892	negative regulation of metabolic process	IEP	Predicted GO
BP	GO:0010468	regulation of gene expression	IEP	Predicted GO
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Predicted GO
BP	GO:0010608	posttranscriptional regulation of gene expression	IEP	Predicted GO
BP	GO:0010629	negative regulation of gene expression	IEP	Predicted GO
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	Predicted GO
BP	GO:0017148	negative regulation of translation	IEP	Predicted GO
BP	GO:0019222	regulation of metabolic process	IEP	Predicted GO
MF	GO:0030597	RNA glycosylase activity	IEP	Predicted GO
MF	GO:0030598	rRNA N-glycosylase activity	IEP	Predicted GO
BP	GO:0031323	regulation of cellular metabolic process	IEP	Predicted GO
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	Predicted GO
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Predicted GO
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	Predicted GO
BP	GO:0032268	regulation of cellular protein metabolic process	IEP	Predicted GO
BP	GO:0032269	negative regulation of cellular protein metabolic process	IEP	Predicted GO
BP	GO:0034248	regulation of cellular amide metabolic process	IEP	Predicted GO
BP	GO:0034249	negative regulation of cellular amide metabolic process	IEP	Predicted GO
BP	GO:0050789	regulation of biological process	IEP	Predicted GO
BP	GO:0050794	regulation of cellular process	IEP	Predicted GO
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0051246	regulation of protein metabolic process	IEP	Predicted GO
BP	GO:0051248	negative regulation of protein metabolic process	IEP	Predicted GO
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Predicted GO
BP	GO:0065007	biological regulation	IEP	Predicted GO
BP	GO:0080090	regulation of primary metabolic process	IEP	Predicted GO
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	Predicted GO
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001828	ANF_lig-bd_rcpt	80	436
IPR001320	Iontro_rcpt	842	874
IPR001638	Solute-binding_3/MltF_N	518	841

External Links

No external refs found!

Sobic.004G013200.2

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation