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  5. Sobic.004G013300.1

Sobic.004G013300.1


Description : ligand-gated cation channel *(GLR)


Gene families : OG_42_0000065 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000065_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G013300.1
Cluster HCAA Clusters: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
A4A49_28968 No alias glutamate receptor 2.8 0.02 Orthogroups_2024-Update
At5g11180 No alias Glutamate receptor 2.6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFN8] 0.03 Orthogroups_2024-Update
Brara.B00398.1 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
Brara.I03484.1 No alias ligand-gated cation channel *(GLR) 0.02 Orthogroups_2024-Update
GRMZM2G302673 No alias glutamate receptor 2.7 0.03 Orthogroups_2024-Update
Glyma.09G197400 No alias glutamate receptor 3.3 0.03 Orthogroups_2024-Update
Glyma.12G194100 No alias glutamate receptor 5 0.03 Orthogroups_2024-Update
Glyma.13G172100 No alias glutamate receptor 2.7 0.03 Orthogroups_2024-Update
Glyma.13G272400 No alias glutamate receptor 2.8 0.03 Orthogroups_2024-Update
MA_9224859g0010 No alias (at4g35290 : 187.0) Encodes a putative glutamate... 0.03 Orthogroups_2024-Update
PSME_00000831-RA No alias (at4g35290 : 118.0) Encodes a putative glutamate... 0.03 Orthogroups_2024-Update
PSME_00021963-RA No alias (at1g05200 : 294.0) member of Putative ligand-gated ion... 0.03 Orthogroups_2024-Update
PSME_00027644-RA No alias (at2g29120 : 490.0) member of Putative ligand-gated ion... 0.05 Orthogroups_2024-Update
Potri.018G011800 No alias glutamate receptor 2.8 0.03 Orthogroups_2024-Update
Seita.1G009400.1 No alias ligand-gated cation channel *(GLR) 0.05 Orthogroups_2024-Update
Seita.2G212900.1 No alias ligand-gated cation channel *(GLR) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0015276 ligand-gated ion channel activity IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004521 endoribonuclease activity IEP Predicted GO
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001320 Iontro_rcpt 812 844
IPR001828 ANF_lig-bd_rcpt 50 406
IPR001638 Solute-binding_3/MltF_N 483 811
No external refs found!