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  5. Sobic.004G020700.1

Sobic.004G020700.1


Description : RNA splicing factor *(RS31/40/41)


Gene families : OG_42_0001097 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001097_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G020700.1
Cluster HCAA Clusters: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
Bradi5g01430 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Glyma.07G078300 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.01 Orthogroups_2024-Update
LOC_Os02g03040 No alias RNA recognition motif containing protein, expressed 0.01 Orthogroups_2024-Update
LOC_Os04g02870 No alias RNA recognition motif containing protein, putative, expressed 0.01 Orthogroups_2024-Update
PSME_00001274-RA No alias (at4g25500 : 298.0) encodes an arginine/serine-rich... 0.03 Orthogroups_2024-Update
Potri.002G175000 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.01 Orthogroups_2024-Update
Potri.015G135800 No alias arginine/serine-rich splicing factor 35 0.01 Orthogroups_2024-Update
Sopen03g005120 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0008037 cell recognition IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 97 159
IPR000504 RRM_dom 4 62
No external refs found!