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  5. Sobic.004G028700.1

Sobic.004G028700.1


Description : EC_3.2 glycosylase


Gene families : OG_42_0000306 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000306_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G028700.1
Cluster HCAA Clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
A4A49_14444 No alias putative polygalacturonase 0.03 Orthogroups_2024-Update
A4A49_21681 No alias putative polygalacturonase 0.03 Orthogroups_2024-Update
At3g07970 No alias Polygalacturonase QRT2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFB7] 0.02 Orthogroups_2024-Update
Bradi2g46400 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.G00978.1 No alias EC_3.2 glycosylase 0.05 Orthogroups_2024-Update
GRMZM2G004500 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.14G044200 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
LOC_Os03g59330 No alias polygalacturonase, putative, expressed 0.05 Orthogroups_2024-Update
MA_96282g0010 No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
PSME_00025694-RA No alias (at1g80170 : 422.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
Solyc03g116500 No alias polygalacturonase (XOPG1) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA 16Dec
BP GO:0005975 carbohydrate metabolic process IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
BP GO:0048364 root development IEP Predicted GO
BP GO:0048367 shoot system development IEP Predicted GO
BP GO:0048731 system development IEP Predicted GO
BP GO:0099402 plant organ development IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 138 461
No external refs found!