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  5. Sobic.004G034100.1

Sobic.004G034100.1


Description : NLP-type transcription factor & transcription factor *(NIN)


Gene families : OG_42_0000432 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000432_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G034100.1
Cluster HCAA Clusters: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
118918 No alias Plant regulator RWP-RK family protein 0.03 Orthogroups_2024-Update
61084 No alias Plant regulator RWP-RK family protein 0.06 Orthogroups_2024-Update
A4A49_11964 No alias protein nlp4 0.03 Orthogroups_2024-Update
Brara.F01471.1 No alias NLP-type transcription factor & transcription factor *(NIN) 0.04 Orthogroups_2024-Update
Brara.F03918.1 No alias NLP-type transcription factor & transcription factor *(NIN) 0.03 Orthogroups_2024-Update
GRMZM2G031398 No alias Plant regulator RWP-RK family protein 0.03 Orthogroups_2024-Update
GRMZM2G042278 No alias Plant regulator RWP-RK family protein 0.03 Orthogroups_2024-Update
HORVU6Hr1G018510.2 No alias NLP-type transcription factor 0.05 Orthogroups_2024-Update
LOC_Os01g13540 No alias NIN, putative, expressed 0.03 Orthogroups_2024-Update
Potri.016G042900 No alias Plant regulator RWP-RK family protein 0.03 Orthogroups_2024-Update
Pp1s250_18V6 No alias T19F6.10; RWP-RK domain-containing protein [Arabidopsis thaliana] 0.03 Orthogroups_2024-Update
Seita.2G298700.1 No alias NLP-type transcription factor & transcription factor *(NIN) 0.04 Orthogroups_2024-Update
Solyc08g008410 No alias Plant regulator RWP-RK family protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc08g082750 No alias Plant regulator RWP-RK family protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Sopen08g004760 No alias RWP-RK domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0006629 lipid metabolic process IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0008610 lipid biosynthetic process IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
BP GO:0034220 ion transmembrane transport IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0042255 ribosome assembly IEP Predicted GO
BP GO:0042256 mature ribosome assembly IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
BP GO:0072488 ammonium transmembrane transport IEP Predicted GO
BP GO:0098655 cation transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR003035 RWP-RK_dom 518 565
IPR000270 PB1_dom 643 712
No external refs found!