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  5. Sobic.004G039400.2

Sobic.004G039400.2


Description : mRNA unwinding factor *(eIF4A))


Gene families : OG_42_0000623 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000623_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G039400.2
Cluster HCAA Clusters: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
143895 No alias eukaryotic translation initiation factor 4A1 0.02 Orthogroups_2024-Update
85554 No alias eukaryotic translation initiation factor 4A1 0.03 Orthogroups_2024-Update
Brara.C03500.1 No alias mRNA unwinding factor *(eIF4A)) 0.03 Orthogroups_2024-Update
Brara.C03756.1 No alias helicase component *(eIF4A3) of RNA quality control Exon... 0.03 Orthogroups_2024-Update
Glyma.09G065600 No alias eukaryotic translation initiation factor 4A1 0.02 Orthogroups_2024-Update
Glyma.13G106200 No alias eukaryotic translation initiation factor 4A1 0.04 Orthogroups_2024-Update
Glyma.13G347900 No alias eif4a-2 0.04 Orthogroups_2024-Update
Glyma.15G026100 No alias eif4a-2 0.04 Orthogroups_2024-Update
Glyma.15G171800 No alias eukaryotic translation initiation factor 4A1 0.05 Orthogroups_2024-Update
Kfl00844_0040 kfl00844_0040_v1.1 (q40471|if4a9_tobac : 738.0) Eukaryotic initiation... 0.02 Orthogroups_2024-Update
MA_1954g0010 No alias (p35683|if4a_orysa : 533.0) Eukaryotic initiation factor... 0.03 Orthogroups_2024-Update
Solyc12g095990 No alias RNA helicase DEAD40 0.04 Orthogroups_2024-Update
Solyc12g096000 No alias RNA helicase DEAD41 0.04 Orthogroups_2024-Update
Sopen12g031890 No alias DEAD/DEAH box helicase 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 263 371
IPR011545 DEAD/DEAH_box_helicase_dom 62 223
No external refs found!