Sobic.004G045400.1

Description : component *(eL43) of large ribosomal-subunit (LSU) proteome

Gene families : OG_42_0001690 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001690_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.004G045400.1
Cluster	HCAA Clusters: Cluster_24

Target	Alias	Description	ECC score	Gene Family Method
Bradi2g17040	No alias	Zinc-binding ribosomal protein family protein	0.12	Orthogroups_2024-Update
Bradi2g46580	No alias	Zinc-binding ribosomal protein family protein	0.14	Orthogroups_2024-Update
Brara.D00174.1	No alias	component *(eL43) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Brara.G01877.1	No alias	component *(eL43) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Brara.I04155.1	No alias	component *(eL43) of large ribosomal-subunit (LSU) proteome	0.16	Orthogroups_2024-Update
Cre06.g257150	No alias	Zinc-binding ribosomal protein family protein	0.14	Orthogroups_2024-Update
GRMZM2G088880	No alias	Zinc-binding ribosomal protein family protein	0.06	Orthogroups_2024-Update
Glyma.05G067400	No alias	Zinc-binding ribosomal protein family protein	0.08	Orthogroups_2024-Update
Glyma.07G118600	No alias	Zinc-binding ribosomal protein family protein	0.08	Orthogroups_2024-Update
Glyma.11G039200	No alias	Zinc-binding ribosomal protein family protein	0.08	Orthogroups_2024-Update
Glyma.17G149600	No alias	Zinc-binding ribosomal protein family protein	0.13	Orthogroups_2024-Update
HORVU3Hr1G062590.1	No alias	component *(eL43) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
HORVU7Hr1G081910.1	No alias	component *(eL43) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
LOC_Os05g48320	No alias	60S ribosomal protein L37a, putative, expressed	0.03	Orthogroups_2024-Update
MA_4732g0010	No alias	(q5qm99\|rl37a_orysa : 129.0) 60S ribosomal protein L37a...	0.04	Orthogroups_2024-Update
Mp5g08340.1	No alias	component RPL37a of LSU proteome component	0.03	Orthogroups_2024-Update
Mp5g09590.1	No alias	component RPL37a of LSU proteome component	0.07	Orthogroups_2024-Update
PSME_00003753-RA	No alias	(q5qm99\|rl37a_orysa : 183.0) 60S ribosomal protein L37a...	0.08	Orthogroups_2024-Update
PSME_00039252-RA	No alias	(q5qm99\|rl37a_orysa : 183.0) 60S ribosomal protein L37a...	0.07	Orthogroups_2024-Update
PSME_00044091-RA	No alias	(q5qm99\|rl37a_orysa : 183.0) 60S ribosomal protein L37a...	0.07	Orthogroups_2024-Update
Potri.001G149300	No alias	Zinc-binding ribosomal protein family protein	0.04	Orthogroups_2024-Update
Potri.003G085100	No alias	Zinc-binding ribosomal protein family protein	0.06	Orthogroups_2024-Update
Potri.014G052400	No alias	Zinc-binding ribosomal protein family protein	0.03	Orthogroups_2024-Update
Pp1s1_348V6	No alias	60s ribosomal protein l37a	0.02	Orthogroups_2024-Update
Pp1s200_49V6	No alias	60s ribosomal protein l37a	0.27	Orthogroups_2024-Update
Pp1s2_289V6	No alias	60s ribosomal protein l37a	0.21	Orthogroups_2024-Update
Pp1s39_288V6	No alias	60s ribosomal protein l37a	0.23	Orthogroups_2024-Update
Pp1s76_74V6	No alias	60s ribosomal protein l37a	0.19	Orthogroups_2024-Update
Seita.5G271000.1	No alias	component *(eL43) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Seita.7G069200.1	No alias	component *(eL43) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Sobic.009G227400.1	No alias	component *(eL43) of large ribosomal-subunit (LSU) proteome	0.13	Orthogroups_2024-Update
Solyc08g007140	No alias	60S ribosomal protein L37a (AHRD V3.3 *** RL37A_GOSHI)	0.2	Orthogroups_2024-Update
Solyc08g077720	No alias	60S ribosomal protein L37a (AHRD V3.3 *** RL37A_GOSHI)	0.18	Orthogroups_2024-Update
Sopen08g003090	No alias	Ribosomal L37ae protein family	0.18	Orthogroups_2024-Update
Sopen08g026220	No alias	Ribosomal L37ae protein family	0.13	Orthogroups_2024-Update
evm.model.tig00000718.64	No alias	(q9xhe4\|rl37a_goshi : 145.0) 60S ribosomal protein L37a...	0.14	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0004332	fructose-bisphosphate aldolase activity	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
MF	GO:0016832	aldehyde-lyase activity	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
MF	GO:0034061	DNA polymerase activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002674	Ribosomal_L37ae	4	88

External Links

No external refs found!

Sobic.004G045400.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation