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  5. Sobic.004G050100.1

Sobic.004G050100.1


Description : UBQ ubiquitin-fold protein


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G050100.1
Cluster HCAA Clusters: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
163447 No alias ubiquitin 4 0.04 Orthogroups_2024-Update
173723 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
228943 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
A4A49_13911 No alias polyubiquitin 10 0.02 Orthogroups_2024-Update
A4A49_39502 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
A4A49_63164 No alias polyubiquitin 10 0.03 Orthogroups_2024-Update
At4g02970 No alias Function unknown 0.03 Orthogroups_2024-Update
Bradi1g32860 No alias polyubiquitin 10 0.02 Orthogroups_2024-Update
Brara.H01228.1 No alias UBQ ubiquitin-fold protein 0.02 Orthogroups_2024-Update
GRMZM2G005461 No alias ubiquitin 9 0.04 Orthogroups_2024-Update
GRMZM2G047727 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.02 Orthogroups_2024-Update
MA_100402g0010 No alias (at4g02890 : 582.0) Polyubiquitin gene containing 4... 0.04 Orthogroups_2024-Update
MA_10326002g0010 No alias (at4g05320 : 855.0) One of five polyubiquitin genes in... 0.04 Orthogroups_2024-Update
MA_13121g0010 No alias (at5g03240 : 264.0) encodes ubiquitin that is attached... 0.02 Orthogroups_2024-Update
MA_6985771g0010 No alias (at5g03240 : 211.0) encodes ubiquitin that is attached... 0.03 Orthogroups_2024-Update
MA_7263500g0010 No alias (at4g02890 : 590.0) Polyubiquitin gene containing 4... 0.03 Orthogroups_2024-Update
MA_93495g0010 No alias (at4g05320 : 654.0) One of five polyubiquitin genes in... 0.04 Orthogroups_2024-Update
Pp1s46_189V6 No alias polyubiquitin 0.02 Orthogroups_2024-Update
Pp1s4_496V6 No alias No description available 0.02 Orthogroups_2024-Update
Seita.1G282500.1 No alias UBQ ubiquitin-fold protein 0.05 Orthogroups_2024-Update
Seita.2G110900.1 No alias UBQ ubiquitin-fold protein 0.03 Orthogroups_2024-Update
Seita.2G207500.1 No alias RUB ubiquitin-fold protein 0.04 Orthogroups_2024-Update
Seita.3G398300.1 No alias Unknown function 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0002682 regulation of immune system process IEP Predicted GO
BP GO:0002831 regulation of response to biotic stimulus IEP Predicted GO
MF GO:0005102 signaling receptor binding IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
MF GO:0008083 growth factor activity IEP Predicted GO
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
BP GO:0008283 cell proliferation IEP Predicted GO
BP GO:0010112 regulation of systemic acquired resistance IEP Predicted GO
MF GO:0015035 protein disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015036 disulfide oxidoreductase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predicted GO
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0030545 receptor regulator activity IEP Predicted GO
BP GO:0031347 regulation of defense response IEP Predicted GO
BP GO:0032101 regulation of response to external stimulus IEP Predicted GO
BP GO:0043900 regulation of multi-organism process IEP Predicted GO
BP GO:0045088 regulation of innate immune response IEP Predicted GO
MF GO:0048018 receptor ligand activity IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
BP GO:0050776 regulation of immune response IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0080134 regulation of response to stress IEP Predicted GO
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 231 302
IPR000626 Ubiquitin_dom 3 74
IPR000626 Ubiquitin_dom 79 150
IPR000626 Ubiquitin_dom 383 454
IPR000626 Ubiquitin_dom 307 378
IPR000626 Ubiquitin_dom 155 226
No external refs found!