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  5. Sobic.004G062500.1

Sobic.004G062500.1


Description : p-coumarate


Gene families : OG_42_0000133 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000133_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G062500.1
Cluster HCAA Clusters: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
181279 No alias AMP-dependent synthetase and ligase family protein 0.03 Orthogroups_2024-Update
A4A49_15235 No alias 4-coumarate--coa ligase 2 0.03 Orthogroups_2024-Update
A4A49_40482 No alias 4-coumarate--coa ligase 1 0.03 Orthogroups_2024-Update
Bradi1g76280 No alias OPC-8:0 CoA ligase1 0.02 Orthogroups_2024-Update
Bradi3g05750 No alias 4-coumarate:CoA ligase 2 0.05 Orthogroups_2024-Update
Bradi3g37300 No alias 4-coumarate:CoA ligase 2 0.07 Orthogroups_2024-Update
Bradi3g52350 No alias 4-coumarate:CoA ligase 3 0.05 Orthogroups_2024-Update
Bradi5g04760 No alias acyl-CoA synthetase 5 0.04 Orthogroups_2024-Update
Brara.B03845.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.H02326.1 No alias OPC-8 0.04 Orthogroups_2024-Update
GRMZM2G075333 No alias 4-coumarate:CoA ligase 2 0.03 Orthogroups_2024-Update
Glyma.11G091600 No alias 4-coumarate:CoA ligase 3 0.03 Orthogroups_2024-Update
HORVU0Hr1G018190.6 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G081940.3 No alias OPC-8 0.03 Orthogroups_2024-Update
HORVU6Hr1G030390.2 No alias p-coumarate 0.03 Orthogroups_2024-Update
LOC_Os02g08100 No alias AMP-binding domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g04000 No alias AMP-binding domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os08g14760 No alias AMP-binding domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_103893g0010 No alias (at1g20510 : 417.0) OPC-8:0 CoA ligase1 (OPCL1);... 0.03 Orthogroups_2024-Update
MA_10426159g0010 No alias (at1g20510 : 528.0) OPC-8:0 CoA ligase1 (OPCL1);... 0.03 Orthogroups_2024-Update
MA_10430515g0010 No alias (at1g20510 : 564.0) OPC-8:0 CoA ligase1 (OPCL1);... 0.03 Orthogroups_2024-Update
MA_10432069g0020 No alias (at1g20510 : 391.0) OPC-8:0 CoA ligase1 (OPCL1);... 0.02 Orthogroups_2024-Update
MA_10432138g0010 No alias (at1g20510 : 477.0) OPC-8:0 CoA ligase1 (OPCL1);... 0.04 Orthogroups_2024-Update
MA_70509g0010 No alias (o24146|4cl2_tobac : 763.0) 4-coumarate--CoA ligase 2... 0.04 Orthogroups_2024-Update
PSME_00008139-RA No alias (p31685|4cl2_soltu : 666.0) 4-coumarate--CoA ligase 2... 0.03 Orthogroups_2024-Update
PSME_00010613-RA No alias (at1g20510 : 572.0) OPC-8:0 CoA ligase1 (OPCL1);... 0.04 Orthogroups_2024-Update
PSME_00011573-RA No alias (at4g05160 : 636.0) Encodes a peroxisomal protein... 0.03 Orthogroups_2024-Update
PSME_00013808-RA No alias (at1g20510 : 243.0) OPC-8:0 CoA ligase1 (OPCL1);... 0.03 Orthogroups_2024-Update
PSME_00013809-RA No alias (at1g20510 : 678.0) OPC-8:0 CoA ligase1 (OPCL1);... 0.04 Orthogroups_2024-Update
PSME_00019640-RA No alias (at1g20510 : 494.0) OPC-8:0 CoA ligase1 (OPCL1);... 0.03 Orthogroups_2024-Update
PSME_00022570-RA No alias (at1g62940 : 648.0) encodes an acyl-CoA synthetase, has... 0.03 Orthogroups_2024-Update
Potri.001G036900 No alias 4-coumarate:CoA ligase 2 0.02 Orthogroups_2024-Update
Potri.005G248500 No alias OPC-8:0 CoA ligase1 0.03 Orthogroups_2024-Update
Potri.008G031500 No alias AMP-dependent synthetase and ligase family protein 0.03 Orthogroups_2024-Update
Potri.010G057000 No alias AMP-dependent synthetase and ligase family protein 0.04 Orthogroups_2024-Update
Potri.012G095000 No alias AMP-dependent synthetase and ligase family protein 0.03 Orthogroups_2024-Update
Potri.017G034901 No alias OPC-8:0 CoA ligase1 0.02 Orthogroups_2024-Update
Potri.017G035100 No alias OPC-8:0 CoA ligase1 0.02 Orthogroups_2024-Update
Pp1s12_59V6 No alias amp dependent 0.02 Orthogroups_2024-Update
Seita.1G065800.1 No alias p-coumarate 0.05 Orthogroups_2024-Update
Seita.4G191500.1 No alias p-coumarate 0.04 Orthogroups_2024-Update
Seita.6G167900.1 No alias p-coumarate 0.04 Orthogroups_2024-Update
Sobic.001G516600.1 No alias OPC-8 0.05 Orthogroups_2024-Update
Sopen12g031420 No alias AMP-binding enzyme 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004478 methionine adenosyltransferase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Predicted GO
BP GO:0006790 sulfur compound metabolic process IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
BP GO:0046500 S-adenosylmethionine metabolic process IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
BP GO:0072488 ammonium transmembrane transport IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000873 AMP-dep_Synth/Lig 54 456
IPR025110 AMP-bd_C 465 540
No external refs found!