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  5. Sobic.004G063200.1

Sobic.004G063200.1


Description : floral promoter *(CONSTANS) & BBX class-I transcription factor


Gene families : OG_42_0000725 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000725_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G063200.1
Cluster HCAA Clusters: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
102902 No alias CONSTANS-like 5 0.03 Orthogroups_2024-Update
A4A49_38205 No alias zinc finger protein constans-like 5 0.03 Orthogroups_2024-Update
At5g57660 No alias Zinc finger protein CONSTANS-LIKE 5... 0.06 Orthogroups_2024-Update
Bradi3g48447 No alias CONSTANS-like 3 0.03 Orthogroups_2024-Update
Bradi5g14600 No alias CONSTANS-like 3 0.02 Orthogroups_2024-Update
Brara.B01196.1 No alias floral promoter *(CONSTANS) & BBX class-I transcription factor 0.05 Orthogroups_2024-Update
GRMZM2G148772 No alias CONSTANS-like 5 0.04 Orthogroups_2024-Update
Glyma.13G093800 No alias CONSTANS-like 5 0.04 Orthogroups_2024-Update
Glyma.17G066600 No alias CONSTANS-like 5 0.04 Orthogroups_2024-Update
LOC_Os02g08150 No alias CCT/B-box zinc finger protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g44450 No alias CCT/B-box zinc finger protein, putative, expressed 0.03 Orthogroups_2024-Update
MA_7292g0010 No alias (at5g24930 : 245.0) CONSTANS-like 4 (COL4); FUNCTIONS... 0.04 Orthogroups_2024-Update
Solyc07g006630 No alias CONSTANS-like protein (AHRD V3.3 *** B2MW87_SOLLC) 0.06 Orthogroups_2024-Update
Sopen07g002740 No alias CCT motif 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR010402 CCT_domain 296 338
IPR000315 Znf_B-box 55 100
No external refs found!